| Enzyme: | XhoI | Longest uncut segments |
| Specificity: | CTCGAG | Repeats in uncut segments |
| Number of sites: | 119999 | Genes in uncut segments |
| Mean distance between sites: | 23844 base pairs | |
| Standard deviation: | 28573 base pairs | |
| Site density | 41.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 665272 | chr15 | NT_037852.6 | 1248407-1913679 | 15.15 % in | 411 repeats | 2.89 % in | 3 genes |
| 2 | 430883 | chr3 | NT_022459.15 | 19927575-20358458 | 49.98 % in | 651 repeats | 0.00 % in | 0 genes |
| 3 | 423692 | chr6 | NT_167244.1 | 2348991-2772683 | 2.86 % in | 53 repeats | 0.00 % in | 0 genes |
| 4 | 403942 | chr1 | NT_167186.1 | 9643992-10047934 | 43.32 % in | 585 repeats | 100.00 % in | 1 genes |
| 5 | 370506 | chr2 | NT_005403.17 | 13582230-13952736 | 39.39 % in | 506 repeats | 87.02 % in | 1 genes |
| 6 | 370408 | chr13 | NT_024524.14 | 36631407-37001815 | 53.04 % in | 587 repeats | 0.00 % in | 0 genes |
| 7 | 369145 | chr6 | NT_167244.1 | 3628287-3997432 | 20.13 % in | 240 repeats | 13.87 % in | 3 genes |
| 8 | 356911 | chr12 | NT_009714.17 | 21035206-21392117 | 54.36 % in | 601 repeats | 62.36 % in | 2 genes |
| 9 | 350739 | chrX | NT_011681.16 | 317101-667840 | 73.14 % in | 621 repeats | 0.00 % in | 0 genes |
| 10 | 348888 | chr1 | NT_004487.19 | 43240477-43589365 | 55.14 % in | 576 repeats | 0.00 % in | 0 genes |
| 11 | 333779 | chr8 | NT_167187.1 | 31283284-31617063 | 99.14 % in | 94 repeats | 0.00 % in | 0 genes |
| 12 | 332202 | chr13 | NT_009952.14 | 15242616-15574818 | 39.04 % in | 495 repeats | 0.00 % in | 0 genes |
| 13 | 329082 | chr5 | NT_006713.15 | 13571982-13901064 | 49.26 % in | 527 repeats | 0.00 % in | 0 genes |
| 14 | 326096 | chr5 | NT_034772.6 | 33576136-33902232 | 56.94 % in | 472 repeats | 0.00 % in | 0 genes |
| 15 | 325546 | chr5 | NT_006576.16 | 21991759-22317305 | 41.07 % in | 523 repeats | 0.00 % in | 0 genes |
| 16 | 323356 | chr7 | NT_007819.17 | 9705967-10029323 | 52.51 % in | 478 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 665272 | chr15 | NT_037852.6 | 1248407-1913679 | 411 | 130 | AluSx (24) | AluJb (16) | MIRb (14) | |
| 2 | 430883 | chr3 | NT_022459.15 | 19927575-20358458 | 651 | 201 | AT_rich (71) | (TA)n (24) | L2a (22) | |
| 3 | 423692 | chr6 | NT_167244.1 | 2348991-2772683 | 53 | 33 | AluJb (4) | L4 (3) | L1ME4a (3) | |
| 4 | 403942 | chr1 | NT_167186.1 | 9643992-10047934 | 585 | 175 | AT_rich (55) | MIRb (26) | L2c (25) | |
| 5 | 370506 | chr2 | NT_005403.17 | 13582230-13952736 | 506 | 170 | AT_rich (54) | MIRb (26) | MIR (25) | |
| 6 | 370408 | chr13 | NT_024524.14 | 36631407-37001815 | 587 | 194 | AT_rich (66) | L2a (17) | (TA)n (15) | |
| 7 | 369145 | chr6 | NT_167244.1 | 3628287-3997432 | 240 | 107 | L2a (18) | AT_rich (17) | AluY (9) | |
| 8 | 356911 | chr12 | NT_009714.17 | 21035206-21392117 | 601 | 212 | AT_rich (46) | L2c (24) | L2a (18) | |
| 9 | 350739 | chrX | NT_011681.16 | 317101-667840 | 621 | 210 | L2a (22) | AT_rich (22) | MIR (21) | |
| 10 | 348888 | chr1 | NT_004487.19 | 43240477-43589365 | 576 | 202 | AT_rich (66) | L2a (31) | MIRb (15) | |
| 11 | 333779 | chr8 | NT_167187.1 | 31283284-31617063 | 94 | 26 | ALR/Alpha (49) | AluY (7) | LTR14C (5) | |
| 12 | 332202 | chr13 | NT_009952.14 | 15242616-15574818 | 495 | 157 | AT_rich (54) | MIRb (18) | MIR (18) | |
| 13 | 329082 | chr5 | NT_006713.15 | 13571982-13901064 | 527 | 185 | AT_rich (41) | L2a (21) | MIR (17) | |
| 14 | 326096 | chr5 | NT_034772.6 | 33576136-33902232 | 472 | 179 | AT_rich (39) | L2a (16) | L1M5 (13) | |
| 15 | 325546 | chr5 | NT_006576.16 | 21991759-22317305 | 523 | 166 | AT_rich (58) | L2a (34) | AluSx (24) | |
| 16 | 323356 | chr7 | NT_007819.17 | 9705967-10029323 | 478 | 175 | AT_rich (50) | (TA)n (17) | MIR (14) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 665272 | chr15 | NT_037852.6 | 1248407-1913679 | LOC283804 | |
| LOC727914 | ||||||
| LOC100418897 | ||||||
| 4 | 403942 | chr1 | NT_167186.1 | 9643992-10047934 | MRPS18BP1 | Usherin_isoform_A |
| 5 | 370506 | chr2 | NT_005403.17 | 13582230-13952736 | KCNH7 | potassium_voltage-gated_channel_subfamily_H_member_7_isoform_2 |
| 7 | 369145 | chr6 | NT_167244.1 | 3628287-3997432 | HNRNPA1P2 | chromosome_6_open_reading_frame_10 |
| BTNL2 | butyrophilin-like_protein_2 | |||||
| HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor | |||||
| 8 | 356911 | chr12 | NT_009714.17 | 21035206-21392117 | LOC100129646 | |
| CCDC91 | coiled-coil_domain-containing_protein_91 | |||||