| Enzyme: | MamI | Longest uncut segments |
| Specificity: | GATNNNNATC | Repeats in uncut segments |
| Number of sites: | 444546 | Genes in uncut segments |
| Mean distance between sites: | 6436 base pairs | |
| Standard deviation: | 6799 base pairs | |
| Site density | 155.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 495398 | chr15 | NT_037852.6 | 1396433-1891831 | 0.92 % in | 20 repeats | 0.00 % in | 0 genes |
| 2 | 405883 | chr6 | NT_167244.1 | 2358709-2764592 | 0.37 % in | 7 repeats | 0.00 % in | 0 genes |
| 3 | 263390 | chr6 | NT_167244.1 | 1994421-2257811 | 3.56 % in | 44 repeats | 5.81 % in | 4 genes |
| 4 | 228501 | chr6 | NT_167244.1 | 4378880-4607381 | 5.99 % in | 31 repeats | 2.09 % in | 1 genes |
| 5 | 218086 | chr6 | NT_167244.1 | 3147911-3365997 | 8.62 % in | 100 repeats | 18.99 % in | 3 genes |
| 6 | 187692 | chr6 | NT_167247.1 | 4406977-4594669 | 2.80 % in | 20 repeats | 96.33 % in | 2 genes |
| 7 | 183649 | chr6 | NT_167247.1 | 1546000-1729649 | 5.30 % in | 51 repeats | 9.23 % in | 1 genes |
| 8 | 181811 | chr6 | NT_167244.1 | 3790216-3972027 | 0.79 % in | 7 repeats | 0.00 % in | 0 genes |
| 9 | 175897 | chr6 | NT_167249.1 | 2128987-2304884 | 4.06 % in | 32 repeats | 0.00 % in | 0 genes |
| 10 | 175798 | chr6 | NT_167248.1 | 505966-681764 | 9.02 % in | 17 repeats | 0.00 % in | 0 genes |
| 11 | 172568 | chr7 | NT_023603.5 | 19717-192285 | 99.17 % in | 12 repeats | 0.00 % in | 0 genes |
| 12 | 167719 | chr9 | NT_008470.19 | 21684299-21852018 | 5.63 % in | 32 repeats | 0.00 % in | 0 genes |
| 13 | 154128 | chr14 | NT_026437.12 | 86629871-86783999 | 32.18 % in | 239 repeats | 0.00 % in | 0 genes |
| 14 | 148404 | chr12 | NT_009714.17 | 27173692-27322096 | 81.86 % in | 156 repeats | 0.00 % in | 0 genes |
| 15 | 145058 | chr6 | NT_167244.1 | 2892763-3037821 | 0.86 % in | 8 repeats | 0.00 % in | 0 genes |
| 16 | 137781 | chr6 | NT_167245.1 | 2597437-2735218 | 8.70 % in | 37 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 495398 | chr15 | NT_037852.6 | 1396433-1891831 | 20 | 17 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 405883 | chr6 | NT_167244.1 | 2358709-2764592 | 7 | 6 | AluJb (2) | LTR84b (1) | L4 (1) | |
| 3 | 263390 | chr6 | NT_167244.1 | 1994421-2257811 | 44 | 27 | AluSx (7) | MIR (3) | L2c (3) | |
| 4 | 228501 | chr6 | NT_167244.1 | 4378880-4607381 | 31 | 21 | HERVH-int (4) | AluSx (4) | MER57-int (3) | |
| 5 | 218086 | chr6 | NT_167244.1 | 3147911-3365997 | 100 | 39 | AluSx (11) | L1MC5 (8) | MIR (7) | |
| 6 | 187692 | chr6 | NT_167247.1 | 4406977-4594669 | 20 | 14 | L2b (3) | L1PB1 (3) | (TGGA)n (2) | |
| 7 | 183649 | chr6 | NT_167247.1 | 1546000-1729649 | 51 | 31 | MIRc (4) | MIR3 (4) | L2c (4) | |
| 8 | 181811 | chr6 | NT_167244.1 | 3790216-3972027 | 7 | 6 | MLT1H-int (2) | MLT1H (1) | MER52D (1) | |
| 9 | 175897 | chr6 | NT_167249.1 | 2128987-2304884 | 32 | 17 | AluSx (5) | MamGypLTR1b (3) | L1MB8 (3) | |
| 10 | 175798 | chr6 | NT_167248.1 | 505966-681764 | 17 | 14 | MER4D (2) | L1PA14 (2) | L1M5 (2) | |
| 11 | 172568 | chr7 | NT_023603.5 | 19717-192285 | 12 | 8 | L1PA2 (2) | L1MB7 (2) | AT_rich (2) | |
| 12 | 167719 | chr9 | NT_008470.19 | 21684299-21852018 | 32 | 22 | L1M5 (3) | AluSq (3) | MIRb (2) | |
| 13 | 154128 | chr14 | NT_026437.12 | 86629871-86783999 | 239 | 72 | AluSx (23) | AluJb (20) | AluJo (17) | |
| 14 | 148404 | chr12 | NT_009714.17 | 27173692-27322096 | 156 | 25 | GSATII (116) | GSATX (4) | AluSg (4) | |
| 15 | 145058 | chr6 | NT_167244.1 | 2892763-3037821 | 8 | 7 | AluY (2) | (TCC)n (1) | MER21C (1) | |
| 16 | 137781 | chr6 | NT_167245.1 | 2597437-2735218 | 37 | 31 | MER21-int (3) | Tigger1 (2) | MLT1N2 (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 263390 | chr6 | NT_167244.1 | 1994421-2257811 | MDC1 | mediator_of_DNA_damage_checkpoint_protein_1 |
| LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 | |||||
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 228501 | chr6 | NT_167244.1 | 4378880-4607381 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 218086 | chr6 | NT_167244.1 | 3147911-3365997 | SLC44A4 | choline_transporter-like_protein_4_isoform_3 |
| EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b | |||||
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 187692 | chr6 | NT_167247.1 | 4406977-4594669 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| 7 | 183649 | chr6 | NT_167247.1 | 1546000-1729649 | LOC100421582 | tripartite_motif-containing_protein_26 |