| Enzyme: | DraIII | Longest uncut segments |
| Specificity: | CACNNNGTG | Repeats in uncut segments |
| Number of sites: | 553610 | Genes in uncut segments |
| Mean distance between sites: | 5168 base pairs | |
| Standard deviation: | 5767 base pairs | |
| Site density | 193.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 500122 | chr15 | NT_037852.6 | 1398454-1898576 | 0.92 % in | 21 repeats | 1.10 % in | 1 genes |
| 2 | 411063 | chr6 | NT_167244.1 | 2350214-2761277 | 1.58 % in | 32 repeats | 0.00 % in | 0 genes |
| 3 | 319719 | chrY | NT_011875.12 | 8417557-8737276 | 83.35 % in | 65 repeats | 0.25 % in | 1 genes |
| 4 | 214089 | chr6 | NT_167244.1 | 4385730-4599819 | 2.38 % in | 17 repeats | 0.00 % in | 0 genes |
| 5 | 190704 | chr6 | NT_167244.1 | 3789202-3979906 | 3.37 % in | 27 repeats | 0.00 % in | 0 genes |
| 6 | 187131 | chr6 | NT_167244.1 | 3171755-3358886 | 3.61 % in | 40 repeats | 5.97 % in | 2 genes |
| 7 | 178056 | chr6 | NT_167247.1 | 4419259-4597315 | 1.55 % in | 12 repeats | 100.00 % in | 1 genes |
| 8 | 171975 | chr6 | NT_167249.1 | 2137957-2309932 | 2.90 % in | 26 repeats | 0.00 % in | 0 genes |
| 9 | 168442 | chr6 | NT_167247.1 | 1561581-1730023 | 1.24 % in | 9 repeats | 0.00 % in | 0 genes |
| 10 | 166423 | chr6 | NT_167244.1 | 2879414-3045837 | 8.32 % in | 68 repeats | 0.00 % in | 0 genes |
| 11 | 164386 | chr6 | NT_167248.1 | 516867-681253 | 3.09 % in | 3 repeats | 0.00 % in | 0 genes |
| 12 | 152925 | chr9 | NT_008470.19 | 21691988-21844913 | 0.83 % in | 7 repeats | 0.00 % in | 0 genes |
| 13 | 130888 | chr6 | NT_167244.1 | 1817362-1948250 | 11.33 % in | 66 repeats | 0.00 % in | 0 genes |
| 14 | 127681 | chr6 | NT_167246.1 | 3259282-3386963 | 4.31 % in | 26 repeats | 0.00 % in | 0 genes |
| 15 | 126139 | chr6 | NT_167244.1 | 585457-711596 | 8.60 % in | 40 repeats | 0.00 % in | 0 genes |
| 16 | 125130 | chr6 | NT_167245.1 | 2600523-2725653 | 5.01 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 500122 | chr15 | NT_037852.6 | 1398454-1898576 | 21 | 15 | L2a (3) | MER44C (2) | L1MEf (2) | |
| 2 | 411063 | chr6 | NT_167244.1 | 2350214-2761277 | 32 | 22 | AluJb (4) | L1ME4a (3) | AluSx (3) | |
| 3 | 319719 | chrY | NT_011875.12 | 8417557-8737276 | 65 | 29 | LTR12B (17) | L1PA16 (7) | L1ME3A (6) | |
| 4 | 214089 | chr6 | NT_167244.1 | 4385730-4599819 | 17 | 12 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 5 | 190704 | chr6 | NT_167244.1 | 3789202-3979906 | 27 | 21 | L2a (5) | MLT1H-int (2) | L1M5 (2) | |
| 6 | 187131 | chr6 | NT_167244.1 | 3171755-3358886 | 40 | 21 | AluSx (6) | L1MC5 (4) | L1MB3 (4) | |
| 7 | 178056 | chr6 | NT_167247.1 | 4419259-4597315 | 12 | 11 | MLT1J (2) | (TTAAA)n (1) | MIRb (1) | |
| 8 | 171975 | chr6 | NT_167249.1 | 2137957-2309932 | 26 | 13 | Charlie2b (6) | AluSx (4) | L1MB8 (3) | |
| 9 | 168442 | chr6 | NT_167247.1 | 1561581-1730023 | 9 | 7 | MIR (2) | L1MEe (2) | L1MC3 (1) | |
| 10 | 166423 | chr6 | NT_167244.1 | 2879414-3045837 | 68 | 27 | AluY (7) | AluSx (7) | AluJo (7) | |
| 11 | 164386 | chr6 | NT_167248.1 | 516867-681253 | 3 | 3 | LTR7 (1) | L1PREC2 (1) | HERVH-int (1) | |
| 12 | 152925 | chr9 | NT_008470.19 | 21691988-21844913 | 7 | 5 | LTR67B (2) | L2 (2) | MSTA (1) | |
| 13 | 130888 | chr6 | NT_167244.1 | 1817362-1948250 | 66 | 26 | AluSx (9) | L1MC4 (8) | L2c (6) | |
| 14 | 127681 | chr6 | NT_167246.1 | 3259282-3386963 | 26 | 18 | AluSx (4) | L1MC5 (3) | MIRb (2) | |
| 15 | 126139 | chr6 | NT_167244.1 | 585457-711596 | 40 | 29 | L2c (3) | L2b (3) | L1MA9 (3) | |
| 16 | 125130 | chr6 | NT_167245.1 | 2600523-2725653 | 16 | 13 | MLT1N2 (2) | MER21C (2) | L2 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 500122 | chr15 | NT_037852.6 | 1398454-1898576 | LOC100418897 | |
| 3 | 319719 | chrY | NT_011875.12 | 8417557-8737276 | ZNF884P | |
| 6 | 187131 | chr6 | NT_167244.1 | 3171755-3358886 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 178056 | chr6 | NT_167247.1 | 4419259-4597315 | LOC100507722 | hypothetical_protein_LOC100507722 |