| Enzyme: | HgiGI | Longest uncut segments |
| Specificity: | GRCGYC | Repeats in uncut segments |
| Number of sites: | 457481 | Genes in uncut segments |
| Mean distance between sites: | 6254 base pairs | |
| Standard deviation: | 9605 base pairs | |
| Site density | 159.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494438 | chr15 | NT_037852.6 | 1397157-1891595 | 0.82 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 411005 | chr6 | NT_167244.1 | 2357670-2768675 | 1.25 % in | 21 repeats | 0.00 % in | 0 genes |
| 3 | 319218 | chrY | NT_011875.12 | 8412519-8731737 | 82.55 % in | 71 repeats | 0.25 % in | 1 genes |
| 4 | 238966 | chr8 | NT_008046.16 | 3045071-3284037 | 55.29 % in | 333 repeats | 0.00 % in | 0 genes |
| 5 | 217544 | chr6 | NT_167244.1 | 4385013-4602557 | 3.37 % in | 20 repeats | 0.00 % in | 0 genes |
| 6 | 198098 | chr6 | NT_167247.1 | 1548586-1746684 | 9.98 % in | 82 repeats | 7.29 % in | 2 genes |
| 7 | 195641 | chr6 | NT_167248.1 | 504051-699692 | 13.86 % in | 42 repeats | 1.72 % in | 2 genes |
| 8 | 187721 | chr6 | NT_167247.1 | 4410770-4598491 | 3.29 % in | 24 repeats | 97.09 % in | 2 genes |
| 9 | 186551 | chr7 | NT_023603.5 | 10259-196810 | 96.07 % in | 35 repeats | 0.00 % in | 0 genes |
| 10 | 183131 | chr6 | NT_167244.1 | 3788050-3971181 | 0.76 % in | 8 repeats | 0.00 % in | 0 genes |
| 11 | 177337 | chr6 | NT_167244.1 | 3179938-3357275 | 0.55 % in | 8 repeats | 0.00 % in | 0 genes |
| 12 | 176893 | chr3 | NT_005612.16 | 14625027-14801920 | 40.70 % in | 306 repeats | 0.00 % in | 0 genes |
| 13 | 176707 | chr6 | NT_167249.1 | 2129852-2306559 | 4.86 % in | 38 repeats | 0.00 % in | 0 genes |
| 14 | 163103 | chr5 | NT_006576.16 | 45924614-46087717 | 98.93 % in | 46 repeats | 0.00 % in | 0 genes |
| 15 | 161972 | chr6 | NT_025741.15 | 45724384-45886356 | 60.25 % in | 270 repeats | 0.00 % in | 0 genes |
| 16 | 161930 | chr6 | NT_167244.1 | 2002805-2164735 | 1.75 % in | 14 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494438 | chr15 | NT_037852.6 | 1397157-1891595 | 18 | 15 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 411005 | chr6 | NT_167244.1 | 2357670-2768675 | 21 | 15 | AluY (3) | LTR84b (2) | L4 (2) | |
| 3 | 319218 | chrY | NT_011875.12 | 8412519-8731737 | 71 | 31 | LTR12B (17) | L1PA16 (7) | L1ME3A (6) | |
| 4 | 238966 | chr8 | NT_008046.16 | 3045071-3284037 | 333 | 134 | AT_rich (35) | L2a (18) | L2c (12) | |
| 5 | 217544 | chr6 | NT_167244.1 | 4385013-4602557 | 20 | 13 | MER57-int (3) | AluSx (3) | HERVH-int (2) | |
| 6 | 198098 | chr6 | NT_167247.1 | 1548586-1746684 | 82 | 46 | L1MEf (6) | MIR3 (4) | L1PB2 (4) | |
| 7 | 195641 | chr6 | NT_167248.1 | 504051-699692 | 42 | 32 | AT_rich (5) | L1MA9 (3) | MER4D (2) | |
| 8 | 187721 | chr6 | NT_167247.1 | 4410770-4598491 | 24 | 18 | L2b (3) | AluSx (3) | MLT1J (2) | |
| 9 | 186551 | chr7 | NT_023603.5 | 10259-196810 | 35 | 20 | AT_rich (7) | L1PA2 (4) | ALR/Alpha (3) | |
| 10 | 183131 | chr6 | NT_167244.1 | 3788050-3971181 | 8 | 7 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 11 | 177337 | chr6 | NT_167244.1 | 3179938-3357275 | 8 | 6 | GC_rich (2) | AluSp (2) | L2c (1) | |
| 12 | 176893 | chr3 | NT_005612.16 | 14625027-14801920 | 306 | 121 | AT_rich (25) | MIRb (16) | AluSx (15) | |
| 13 | 176707 | chr6 | NT_167249.1 | 2129852-2306559 | 38 | 19 | AluSx (6) | Charlie2b (4) | MamGypLTR1b (3) | |
| 14 | 163103 | chr5 | NT_006576.16 | 45924614-46087717 | 46 | 12 | ALR/Alpha (25) | L1PA3 (5) | L1PA2 (3) | |
| 15 | 161972 | chr6 | NT_025741.15 | 45724384-45886356 | 270 | 112 | AT_rich (41) | (TA)n (9) | L1ME1 (8) | |
| 16 | 161930 | chr6 | NT_167244.1 | 2002805-2164735 | 14 | 9 | AluSx (4) | FRAM (2) | AluJb (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 319218 | chrY | NT_011875.12 | 8412519-8731737 | ZNF884P | |
| 6 | 198098 | chr6 | NT_167247.1 | 1548586-1746684 | LOC100421582 | tripartite_motif-containing_protein_26 |
| LOC100507720 | ||||||
| 7 | 195641 | chr6 | NT_167248.1 | 504051-699692 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| 8 | 187721 | chr6 | NT_167247.1 | 4410770-4598491 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||