| Enzyme: | CcoMI | Longest uncut segments |
| Specificity: | CAGCAG | Repeats in uncut segments |
| Number of sites: | 2332201 | Genes in uncut segments |
| Mean distance between sites: | 1226 base pairs | |
| Standard deviation: | 1561 base pairs | |
| Site density | 815.1 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490254 | chr15 | NT_037852.6 | 1395422-1885676 | 0.24 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 403197 | chr6 | NT_167244.1 | 2358112-2761309 | 0.37 % in | 7 repeats | 0.00 % in | 0 genes |
| 3 | 212542 | chr6 | NT_167244.1 | 4388006-4600548 | 1.68 % in | 14 repeats | 0.00 % in | 0 genes |
| 4 | 183155 | chr6 | NT_167244.1 | 3789509-3972664 | 1.03 % in | 11 repeats | 0.00 % in | 0 genes |
| 5 | 176347 | chr6 | NT_167244.1 | 3179494-3355841 | 0.26 % in | 6 repeats | 0.41 % in | 1 genes |
| 6 | 172351 | chr6 | NT_167247.1 | 4422132-4594483 | 0.13 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 168057 | chr6 | NT_167247.1 | 1560806-1728863 | 1.11 % in | 8 repeats | 1.28 % in | 1 genes |
| 8 | 167374 | chr6 | NT_167249.1 | 2137908-2305282 | 1.06 % in | 9 repeats | 0.00 % in | 0 genes |
| 9 | 161515 | chr6 | NT_167248.1 | 521134-682649 | 1.37 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 156395 | chr6 | NT_167244.1 | 2008325-2164720 | 0.52 % in | 4 repeats | 0.00 % in | 0 genes |
| 11 | 151009 | chr9 | NT_008470.19 | 21692907-21843916 | 0.28 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 150143 | chr6 | NT_167244.1 | 2890801-3040944 | 3.81 % in | 29 repeats | 0.00 % in | 0 genes |
| 13 | 121072 | chr10 | NT_008705.16 | 38711376-38832448 | 27.59 % in | 220 repeats | 0.00 % in | 0 genes |
| 14 | 118766 | chr6 | NT_167245.1 | 2605702-2724468 | 1.04 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 117212 | chr6 | NT_167247.1 | 1176271-1293483 | 1.19 % in | 2 repeats | 0.00 % in | 0 genes |
| 16 | 114342 | chr6 | NT_167246.1 | 3260945-3375287 | 0.41 % in | 3 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490254 | chr15 | NT_037852.6 | 1395422-1885676 | 7 | 7 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 403197 | chr6 | NT_167244.1 | 2358112-2761309 | 7 | 5 | L4 (2) | AluJb (2) | L1ME4a (1) | |
| 3 | 212542 | chr6 | NT_167244.1 | 4388006-4600548 | 14 | 11 | MER57-int (2) | AluSx (2) | AluSg/x (2) | |
| 4 | 183155 | chr6 | NT_167244.1 | 3789509-3972664 | 11 | 10 | MLT1H-int (2) | (TA)n (1) | MLT1H (1) | |
| 5 | 176347 | chr6 | NT_167244.1 | 3179494-3355841 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 172351 | chr6 | NT_167247.1 | 4422132-4594483 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 168057 | chr6 | NT_167247.1 | 1560806-1728863 | 8 | 7 | MIR (2) | MIRc (1) | L1MEe (1) | |
| 8 | 167374 | chr6 | NT_167249.1 | 2137908-2305282 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 9 | 161515 | chr6 | NT_167248.1 | 521134-682649 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 156395 | chr6 | NT_167244.1 | 2008325-2164720 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 11 | 151009 | chr9 | NT_008470.19 | 21692907-21843916 | 2 | 2 | MIR3 (1) | L1M5 (1) | ||
| 12 | 150143 | chr6 | NT_167244.1 | 2890801-3040944 | 29 | 15 | L1MC5 (6) | AluY (5) | AluSc (3) | |
| 13 | 121072 | chr10 | NT_008705.16 | 38711376-38832448 | 220 | 32 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 14 | 118766 | chr6 | NT_167245.1 | 2605702-2724468 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 117212 | chr6 | NT_167247.1 | 1176271-1293483 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| 16 | 114342 | chr6 | NT_167246.1 | 3260945-3375287 | 3 | 2 | MIRb (2) | AluSx (1) | ||
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 176347 | chr6 | NT_167244.1 | 3179494-3355841 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 172351 | chr6 | NT_167247.1 | 4422132-4594483 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 168057 | chr6 | NT_167247.1 | 1560806-1728863 | LOC100421582 | tripartite_motif-containing_protein_26 |