| Enzyme: | NciI | Longest uncut segments |
| Specificity: | CCSGG | Repeats in uncut segments |
| Number of sites: | 1937123 | Genes in uncut segments |
| Mean distance between sites: | 1477 base pairs | |
| Standard deviation: | 3121 base pairs | |
| Site density | 677.0 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494302 | chr15 | NT_037852.6 | 1397345-1891647 | 0.79 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 403511 | chr6 | NT_167244.1 | 2359390-2762901 | 0.13 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 233459 | chrY | NT_011875.12 | 8416753-8650212 | 78.30 % in | 18 repeats | 0.00 % in | 0 genes |
| 4 | 225047 | chr7 | NT_023603.5 | 6519-231566 | 95.75 % in | 44 repeats | 0.00 % in | 0 genes |
| 5 | 211617 | chr6 | NT_167244.1 | 4386646-4598263 | 1.75 % in | 11 repeats | 0.00 % in | 0 genes |
| 6 | 190854 | chr6 | NT_167248.1 | 508687-699541 | 12.24 % in | 32 repeats | 1.76 % in | 2 genes |
| 7 | 185189 | chr6 | NT_167244.1 | 3785757-3970946 | 0.81 % in | 10 repeats | 0.94 % in | 1 genes |
| 8 | 176389 | chr6 | NT_167244.1 | 3180254-3356643 | 0.24 % in | 4 repeats | 0.26 % in | 1 genes |
| 9 | 175751 | chr6 | NT_167247.1 | 4421878-4597629 | 1.32 % in | 8 repeats | 0.00 % in | 0 genes |
| 10 | 164605 | chr6 | NT_167247.1 | 1562945-1727550 | 0.21 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 157697 | chr19 | NT_011109.16 | 83534-241231 | 99.81 % in | 37 repeats | 0.00 % in | 0 genes |
| 12 | 156248 | chr9 | NT_008470.19 | 21688516-21844764 | 2.64 % in | 13 repeats | 0.00 % in | 0 genes |
| 13 | 156244 | chr6 | NT_167244.1 | 2008358-2164602 | 0.50 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 146190 | chr6 | NT_167244.1 | 2891379-3037569 | 1.61 % in | 10 repeats | 0.00 % in | 0 genes |
| 15 | 142233 | chr7 | NT_077528.2 | 312214-454447 | 24.77 % in | 162 repeats | 0.00 % in | 0 genes |
| 16 | 133260 | chr10 | NT_008705.16 | 38700149-38833409 | 29.03 % in | 243 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494302 | chr15 | NT_037852.6 | 1397345-1891647 | 18 | 15 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 403511 | chr6 | NT_167244.1 | 2359390-2762901 | 3 | 3 | L4 (1) | L1MEg (1) | AluSp (1) | |
| 3 | 233459 | chrY | NT_011875.12 | 8416753-8650212 | 18 | 4 | LTR12B (12) | LTR12D (2) | L1PA7 (2) | |
| 4 | 225047 | chr7 | NT_023603.5 | 6519-231566 | 44 | 25 | AT_rich (8) | ALR/Alpha (5) | L1PA2 (4) | |
| 5 | 211617 | chr6 | NT_167244.1 | 4386646-4598263 | 11 | 8 | MER57-int (3) | AluSx (2) | (TTTTA)n (1) | |
| 6 | 190854 | chr6 | NT_167248.1 | 508687-699541 | 32 | 25 | AT_rich (5) | L1MA9 (3) | L1MC5 (2) | |
| 7 | 185189 | chr6 | NT_167244.1 | 3785757-3970946 | 10 | 8 | AT_rich (2) | AluJb (2) | MLT1H-int (1) | |
| 8 | 176389 | chr6 | NT_167244.1 | 3180254-3356643 | 4 | 4 | GC_rich (1) | Charlie4a (1) | AluSx (1) | |
| 9 | 175751 | chr6 | NT_167247.1 | 4421878-4597629 | 8 | 7 | MLT1J (2) | (TTAAA)n (1) | MER11A (1) | |
| 10 | 164605 | chr6 | NT_167247.1 | 1562945-1727550 | 2 | 2 | MIR (1) | AluSq (1) | ||
| 11 | 157697 | chr19 | NT_011109.16 | 83534-241231 | 37 | 8 | ALR/Alpha (21) | L1PA3 (7) | L1PA4 (3) | |
| 12 | 156248 | chr9 | NT_008470.19 | 21688516-21844764 | 13 | 10 | LTR67B (2) | L2 (2) | L1M4b (2) | |
| 13 | 156244 | chr6 | NT_167244.1 | 2008358-2164602 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 14 | 146190 | chr6 | NT_167244.1 | 2891379-3037569 | 10 | 8 | AluY (3) | (TG)n (1) | (TCC)n (1) | |
| 15 | 142233 | chr7 | NT_077528.2 | 312214-454447 | 162 | 45 | (GAATG)n (20) | (CGAAT)n (18) | AT_rich (11) | |
| 16 | 133260 | chr10 | NT_008705.16 | 38700149-38833409 | 243 | 49 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 6 | 190854 | chr6 | NT_167248.1 | 508687-699541 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| 7 | 185189 | chr6 | NT_167244.1 | 3785757-3970946 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 8 | 176389 | chr6 | NT_167244.1 | 3180254-3356643 | TNXB | tenascin-X_isoform_1_precursor |