| Enzyme: | BglII | Longest uncut segments |
| Specificity: | AGATCT | Repeats in uncut segments |
| Number of sites: | 770515 | Genes in uncut segments |
| Mean distance between sites: | 3713 base pairs | |
| Standard deviation: | 3890 base pairs | |
| Site density | 269.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 487985 | chr15 | NT_037852.6 | 1398193-1886178 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 406106 | chr6 | NT_167244.1 | 2359396-2765502 | 0.42 % in | 8 repeats | 0.00 % in | 0 genes |
| 3 | 258491 | chr6 | NT_167244.1 | 2002417-2260908 | 3.36 % in | 41 repeats | 3.86 % in | 3 genes |
| 4 | 220769 | chr6 | NT_167244.1 | 4380077-4600846 | 2.95 % in | 23 repeats | 1.62 % in | 1 genes |
| 5 | 189473 | chr6 | NT_167244.1 | 3785329-3974802 | 2.65 % in | 23 repeats | 1.14 % in | 1 genes |
| 6 | 182281 | chr6 | NT_167244.1 | 3175265-3357546 | 2.14 % in | 29 repeats | 3.47 % in | 2 genes |
| 7 | 177487 | chr6 | NT_167247.1 | 4420604-4598091 | 1.81 % in | 14 repeats | 100.00 % in | 1 genes |
| 8 | 171147 | chr6 | NT_167249.1 | 2133645-2304792 | 2.52 % in | 20 repeats | 0.00 % in | 0 genes |
| 9 | 166995 | chr6 | NT_167247.1 | 1560862-1727857 | 1.01 % in | 7 repeats | 0.00 % in | 0 genes |
| 10 | 161665 | chr9 | NT_008470.19 | 21684869-21846534 | 4.31 % in | 22 repeats | 0.00 % in | 0 genes |
| 11 | 161094 | chr6 | NT_167248.1 | 521677-682771 | 1.11 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 150546 | chr6 | NT_167244.1 | 2890024-3040570 | 4.12 % in | 32 repeats | 0.00 % in | 0 genes |
| 13 | 126414 | chr6 | NT_167245.1 | 2602459-2728873 | 4.80 % in | 18 repeats | 0.00 % in | 0 genes |
| 14 | 126389 | chr10 | NT_008705.16 | 38710898-38837287 | 27.64 % in | 226 repeats | 0.00 % in | 0 genes |
| 15 | 119520 | chr6 | NT_167245.1 | 133371-252891 | 6.20 % in | 20 repeats | 0.00 % in | 0 genes |
| 16 | 119359 | chr6 | NT_167246.1 | 3260732-3380091 | 2.26 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 487985 | chr15 | NT_037852.6 | 1398193-1886178 | 1 | 1 | AT_rich (1) | |||
| 2 | 406106 | chr6 | NT_167244.1 | 2359396-2765502 | 8 | 6 | LTR84b (2) | AluY (2) | MLT1B (1) | |
| 3 | 258491 | chr6 | NT_167244.1 | 2002417-2260908 | 41 | 25 | AluSx (5) | MIRb (3) | FRAM (3) | |
| 4 | 220769 | chr6 | NT_167244.1 | 4380077-4600846 | 23 | 17 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 5 | 189473 | chr6 | NT_167244.1 | 3785329-3974802 | 23 | 18 | L2a (3) | MLT1H-int (2) | AT_rich (2) | |
| 6 | 182281 | chr6 | NT_167244.1 | 3175265-3357546 | 29 | 16 | AluSx (5) | L1MB3 (4) | GC_rich (3) | |
| 7 | 177487 | chr6 | NT_167247.1 | 4420604-4598091 | 14 | 12 | MLT1J (2) | AluSx (2) | (TTAAA)n (1) | |
| 8 | 171147 | chr6 | NT_167249.1 | 2133645-2304792 | 20 | 11 | AluSx (4) | L1MB8 (3) | MLT1H1 (2) | |
| 9 | 166995 | chr6 | NT_167247.1 | 1560862-1727857 | 7 | 6 | MIR (2) | MIRc (1) | L1MC3 (1) | |
| 10 | 161665 | chr9 | NT_008470.19 | 21684869-21846534 | 22 | 14 | L1M5 (3) | AluSq (3) | MER5B (2) | |
| 11 | 161094 | chr6 | NT_167248.1 | 521677-682771 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 150546 | chr6 | NT_167244.1 | 2890024-3040570 | 32 | 16 | L1MC5 (6) | AluY (5) | AluSc (3) | |
| 13 | 126414 | chr6 | NT_167245.1 | 2602459-2728873 | 18 | 15 | Tigger1 (2) | MLT1N2 (2) | L2 (2) | |
| 14 | 126389 | chr10 | NT_008705.16 | 38710898-38837287 | 226 | 37 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 15 | 119520 | chr6 | NT_167245.1 | 133371-252891 | 20 | 18 | L2c (2) | AluSx (2) | (TTTC)n (1) | |
| 16 | 119359 | chr6 | NT_167246.1 | 3260732-3380091 | 16 | 11 | L1MC5 (3) | AluSx (3) | MIRb (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 258491 | chr6 | NT_167244.1 | 2002417-2260908 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 220769 | chr6 | NT_167244.1 | 4380077-4600846 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 189473 | chr6 | NT_167244.1 | 3785329-3974802 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 182281 | chr6 | NT_167244.1 | 3175265-3357546 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 177487 | chr6 | NT_167247.1 | 4420604-4598091 | LOC100507722 | hypothetical_protein_LOC100507722 |