| Enzyme: | TmaI | Longest uncut segments |
| Specificity: | CGCG | Repeats in uncut segments |
| Number of sites: | 725442 | Genes in uncut segments |
| Mean distance between sites: | 3944 base pairs | |
| Standard deviation: | 8713 base pairs | |
| Site density | 253.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494791 | chr15 | NT_037852.6 | 1396892-1891683 | 0.86 % in | 19 repeats | 0.00 % in | 0 genes |
| 2 | 413882 | chr6 | NT_167244.1 | 2350573-2764455 | 1.60 % in | 32 repeats | 0.00 % in | 0 genes |
| 3 | 246991 | chr6 | NT_167244.1 | 2008485-2255476 | 1.20 % in | 15 repeats | 2.14 % in | 2 genes |
| 4 | 236371 | chr7 | NT_077528.2 | 27004-263375 | 78.65 % in | 44 repeats | 0.00 % in | 0 genes |
| 5 | 221843 | chr5 | NT_006576.16 | 45932273-46154116 | 94.58 % in | 82 repeats | 0.00 % in | 0 genes |
| 6 | 213919 | chr6 | NT_167244.1 | 4386353-4600272 | 2.33 % in | 17 repeats | 0.00 % in | 0 genes |
| 7 | 212109 | chr6 | NT_167244.1 | 3780100-3992209 | 7.59 % in | 58 repeats | 3.48 % in | 1 genes |
| 8 | 207592 | chr12 | NT_029419.12 | 52620748-52828340 | 52.96 % in | 358 repeats | 2.19 % in | 1 genes |
| 9 | 205843 | chr10 | NT_030059.13 | 42974797-43180640 | 66.41 % in | 313 repeats | 0.00 % in | 0 genes |
| 10 | 205172 | chr12 | NT_029419.12 | 23502058-23707230 | 64.77 % in | 320 repeats | 0.00 % in | 0 genes |
| 11 | 202333 | chr6 | NT_007299.13 | 228031-430364 | 57.09 % in | 154 repeats | 0.00 % in | 0 genes |
| 12 | 196620 | chr6 | NT_167248.1 | 503156-699776 | 13.83 % in | 42 repeats | 0.00 % in | 0 genes |
| 13 | 192017 | chr7 | NT_007933.15 | 60815574-61007591 | 48.57 % in | 312 repeats | 0.00 % in | 0 genes |
| 14 | 182371 | chr12 | NT_009714.17 | 26601895-26784266 | 63.36 % in | 266 repeats | 0.00 % in | 0 genes |
| 15 | 181308 | chr4 | NT_016354.19 | 60223849-60405157 | 51.23 % in | 228 repeats | 0.00 % in | 0 genes |
| 16 | 180195 | chr6 | NT_167247.1 | 4421603-4601798 | 2.32 % in | 21 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494791 | chr15 | NT_037852.6 | 1396892-1891683 | 19 | 16 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 413882 | chr6 | NT_167244.1 | 2350573-2764455 | 32 | 23 | AluJb (4) | L1ME4a (3) | MLT2D (2) | |
| 3 | 246991 | chr6 | NT_167244.1 | 2008485-2255476 | 15 | 13 | MIRb (2) | MIR (2) | MER5A1 (1) | |
| 4 | 236371 | chr7 | NT_077528.2 | 27004-263375 | 44 | 6 | ALR/Alpha (28) | L1PA4 (5) | L1P1 (4) | |
| 5 | 221843 | chr5 | NT_006576.16 | 45932273-46154116 | 82 | 31 | ALR/Alpha (28) | AT_rich (8) | L1PA4 (5) | |
| 6 | 213919 | chr6 | NT_167244.1 | 4386353-4600272 | 17 | 12 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 7 | 212109 | chr6 | NT_167244.1 | 3780100-3992209 | 58 | 40 | L2a (9) | L1P3 (3) | AT_rich (3) | |
| 8 | 207592 | chr12 | NT_029419.12 | 52620748-52828340 | 358 | 142 | AT_rich (24) | L2a (15) | MIR (14) | |
| 9 | 205843 | chr10 | NT_030059.13 | 42974797-43180640 | 313 | 119 | AT_rich (18) | MIR (15) | L2c (14) | |
| 10 | 205172 | chr12 | NT_029419.12 | 23502058-23707230 | 320 | 135 | AT_rich (30) | (TA)n (12) | L2a (9) | |
| 11 | 202333 | chr6 | NT_007299.13 | 228031-430364 | 154 | 82 | ALR/Alpha (16) | LTR49-int (12) | AT_rich (7) | |
| 12 | 196620 | chr6 | NT_167248.1 | 503156-699776 | 42 | 32 | AT_rich (5) | L1MA9 (3) | MER4D (2) | |
| 13 | 192017 | chr7 | NT_007933.15 | 60815574-61007591 | 312 | 120 | AT_rich (23) | MIRb (19) | L2a (16) | |
| 14 | 182371 | chr12 | NT_009714.17 | 26601895-26784266 | 266 | 122 | AT_rich (20) | L1MA9 (15) | THE1B (8) | |
| 15 | 181308 | chr4 | NT_016354.19 | 60223849-60405157 | 228 | 99 | AT_rich (39) | L2a (10) | (TA)n (8) | |
| 16 | 180195 | chr6 | NT_167247.1 | 4421603-4601798 | 21 | 16 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 246991 | chr6 | NT_167244.1 | 2008485-2255476 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 7 | 212109 | chr6 | NT_167244.1 | 3780100-3992209 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 8 | 207592 | chr12 | NT_029419.12 | 52620748-52828340 | LOC100507594 | hypothetical_LOC100507594 |