| Enzyme: | NlaCI | Longest uncut segments |
| Specificity: | CATCAC | Repeats in uncut segments |
| Number of sites: | 1572017 | Genes in uncut segments |
| Mean distance between sites: | 1820 base pairs | |
| Standard deviation: | 1944 base pairs | |
| Site density | 549.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 487205 | chr15 | NT_037852.6 | 1398428-1885633 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 404089 | chr6 | NT_167244.1 | 2358241-2762330 | 0.35 % in | 6 repeats | 0.00 % in | 0 genes |
| 3 | 212933 | chr6 | NT_167244.1 | 4387976-4600909 | 1.86 % in | 14 repeats | 0.00 % in | 0 genes |
| 4 | 189449 | chr6 | NT_167244.1 | 3790274-3979723 | 3.10 % in | 24 repeats | 0.00 % in | 0 genes |
| 5 | 177759 | chr6 | NT_167244.1 | 3179242-3357001 | 0.43 % in | 7 repeats | 1.01 % in | 2 genes |
| 6 | 172760 | chr6 | NT_167247.1 | 4421678-4594438 | 0.11 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 168281 | chr6 | NT_167249.1 | 2138155-2306436 | 1.69 % in | 14 repeats | 0.00 % in | 0 genes |
| 8 | 167832 | chr6 | NT_167247.1 | 1560423-1728255 | 1.19 % in | 10 repeats | 1.51 % in | 1 genes |
| 9 | 163015 | chr6 | NT_167248.1 | 521614-684629 | 2.27 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 159703 | chr6 | NT_167244.1 | 2006125-2165828 | 1.19 % in | 9 repeats | 0.00 % in | 0 genes |
| 11 | 151902 | chr9 | NT_008470.19 | 21692551-21844453 | 0.48 % in | 3 repeats | 0.00 % in | 0 genes |
| 12 | 144102 | chr6 | NT_167244.1 | 2893717-3037819 | 0.52 % in | 6 repeats | 0.00 % in | 0 genes |
| 13 | 118937 | chr6 | NT_167245.1 | 2605389-2724326 | 1.18 % in | 3 repeats | 0.00 % in | 0 genes |
| 14 | 116961 | chr6 | NT_167247.1 | 1177314-1294275 | 0.30 % in | 1 repeats | 0.00 % in | 0 genes |
| 15 | 116241 | chr6 | NT_167246.1 | 3259401-3375642 | 0.56 % in | 4 repeats | 0.00 % in | 0 genes |
| 16 | 115320 | chr6 | NT_167245.1 | 135217-250537 | 4.71 % in | 14 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 487205 | chr15 | NT_037852.6 | 1398428-1885633 | 1 | 1 | AT_rich (1) | |||
| 2 | 404089 | chr6 | NT_167244.1 | 2358241-2762330 | 6 | 5 | AluJb (2) | L4 (1) | L1ME4a (1) | |
| 3 | 212933 | chr6 | NT_167244.1 | 4387976-4600909 | 14 | 11 | MER57-int (2) | AluSx (2) | AluSg/x (2) | |
| 4 | 189449 | chr6 | NT_167244.1 | 3790274-3979723 | 24 | 18 | L2a (5) | MLT1H-int (2) | L1M5 (2) | |
| 5 | 177759 | chr6 | NT_167244.1 | 3179242-3357001 | 7 | 5 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 172760 | chr6 | NT_167247.1 | 4421678-4594438 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 168281 | chr6 | NT_167249.1 | 2138155-2306436 | 14 | 6 | Charlie2b (4) | AluSx (4) | L1MB8 (3) | |
| 8 | 167832 | chr6 | NT_167247.1 | 1560423-1728255 | 10 | 8 | Tigger7 (2) | MIR (2) | MIRc (1) | |
| 9 | 163015 | chr6 | NT_167248.1 | 521614-684629 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 159703 | chr6 | NT_167244.1 | 2006125-2165828 | 9 | 6 | AluSx (4) | MIRb (1) | MIR (1) | |
| 11 | 151902 | chr9 | NT_008470.19 | 21692551-21844453 | 3 | 3 | MIR3 (1) | LTR67B (1) | L1M5 (1) | |
| 12 | 144102 | chr6 | NT_167244.1 | 2893717-3037819 | 6 | 6 | (TCC)n (1) | L1MC5 (1) | AluY (1) | |
| 13 | 118937 | chr6 | NT_167245.1 | 2605389-2724326 | 3 | 3 | MLT1E2 (1) | L2a (1) | L2 (1) | |
| 14 | 116961 | chr6 | NT_167247.1 | 1177314-1294275 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 15 | 116241 | chr6 | NT_167246.1 | 3259401-3375642 | 4 | 3 | MIRb (2) | MIR3 (1) | AluSx (1) | |
| 16 | 115320 | chr6 | NT_167245.1 | 135217-250537 | 14 | 13 | L2c (2) | (TTTC)n (1) | MLT1F (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 177759 | chr6 | NT_167244.1 | 3179242-3357001 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 172760 | chr6 | NT_167247.1 | 4421678-4594438 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 167832 | chr6 | NT_167247.1 | 1560423-1728255 | LOC100421582 | tripartite_motif-containing_protein_26 |