| Enzyme: | NcoI | Longest uncut segments |
| Specificity: | CCATGG | Repeats in uncut segments |
| Number of sites: | 751508 | Genes in uncut segments |
| Mean distance between sites: | 3807 base pairs | |
| Standard deviation: | 4230 base pairs | |
| Site density | 262.6 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 491389 | chr15 | NT_037852.6 | 1397762-1889151 | 0.38 % in | 9 repeats | 0.00 % in | 0 genes |
| 2 | 406121 | chr6 | NT_167244.1 | 2356909-2763030 | 0.60 % in | 10 repeats | 0.00 % in | 0 genes |
| 3 | 246281 | chr6 | NT_167244.1 | 2009529-2255810 | 1.07 % in | 11 repeats | 1.72 % in | 2 genes |
| 4 | 228684 | chr6 | NT_167244.1 | 4377889-4606573 | 6.05 % in | 34 repeats | 2.52 % in | 1 genes |
| 5 | 191189 | chr6 | NT_167244.1 | 3785039-3976228 | 3.07 % in | 26 repeats | 1.28 % in | 1 genes |
| 6 | 184307 | chr6 | NT_167244.1 | 3171816-3356123 | 2.80 % in | 35 repeats | 4.56 % in | 1 genes |
| 7 | 178666 | chr6 | NT_167247.1 | 4420283-4598949 | 2.19 % in | 20 repeats | 100.00 % in | 1 genes |
| 8 | 176109 | chr6 | NT_167248.1 | 510529-686638 | 8.67 % in | 8 repeats | 0.00 % in | 0 genes |
| 9 | 167132 | chr6 | NT_167249.1 | 2138201-2305333 | 1.04 % in | 8 repeats | 0.00 % in | 0 genes |
| 10 | 166208 | chr6 | NT_167247.1 | 1561942-1728150 | 0.56 % in | 6 repeats | 0.00 % in | 0 genes |
| 11 | 164179 | chr7 | NT_023603.5 | 31957-196136 | 100.00 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 152180 | chr6 | NT_167244.1 | 2889478-3041658 | 4.43 % in | 35 repeats | 0.00 % in | 0 genes |
| 13 | 151595 | chr9 | NT_008470.19 | 21693226-21844821 | 0.28 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 134845 | chr6 | NT_167244.1 | 1437765-1572610 | 15.93 % in | 57 repeats | 0.00 % in | 0 genes |
| 15 | 121575 | chr5 | NW_003315917.1 | 1126680-1248255 | 8.38 % in | 51 repeats | 0.00 % in | 0 genes |
| 16 | 121336 | chr6 | NT_167247.1 | 1173489-1294825 | 3.34 % in | 7 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 491389 | chr15 | NT_037852.6 | 1397762-1889151 | 9 | 7 | L2a (3) | (TA)n (1) | MLT1L (1) | |
| 2 | 406121 | chr6 | NT_167244.1 | 2356909-2763030 | 10 | 8 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 246281 | chr6 | NT_167244.1 | 2009529-2255810 | 11 | 11 | MIRb (1) | MIR (1) | MER5A1 (1) | |
| 4 | 228684 | chr6 | NT_167244.1 | 4377889-4606573 | 34 | 22 | HERVH-int (4) | AluSx (4) | MER57-int (3) | |
| 5 | 191189 | chr6 | NT_167244.1 | 3785039-3976228 | 26 | 20 | L2a (4) | MLT1H-int (2) | AT_rich (2) | |
| 6 | 184307 | chr6 | NT_167244.1 | 3171816-3356123 | 35 | 19 | AluSx (5) | L1MC5 (4) | L1MB3 (4) | |
| 7 | 178666 | chr6 | NT_167247.1 | 4420283-4598949 | 20 | 16 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 8 | 176109 | chr6 | NT_167248.1 | 510529-686638 | 8 | 8 | LTR7 (1) | L1PREC2 (1) | L1PA7 (1) | |
| 9 | 167132 | chr6 | NT_167249.1 | 2138201-2305333 | 8 | 4 | L1MB8 (3) | AluSx (3) | Charlie2b (1) | |
| 10 | 166208 | chr6 | NT_167247.1 | 1561942-1728150 | 6 | 5 | MIR (2) | L1MC3 (1) | (GGAA)n (1) | |
| 11 | 164179 | chr7 | NT_023603.5 | 31957-196136 | 5 | 2 | L1PA2 (4) | ALR/Alpha (1) | ||
| 12 | 152180 | chr6 | NT_167244.1 | 2889478-3041658 | 35 | 16 | L1MC5 (6) | AluY (5) | AluSc (3) | |
| 13 | 151595 | chr9 | NT_008470.19 | 21693226-21844821 | 4 | 3 | L2 (2) | MIR3 (1) | L1M5 (1) | |
| 14 | 134845 | chr6 | NT_167244.1 | 1437765-1572610 | 57 | 33 | L1MA1 (7) | AluY (5) | L4 (3) | |
| 15 | 121575 | chr5 | NW_003315917.1 | 1126680-1248255 | 51 | 25 | AluJo (9) | AluSx (5) | AluSg (5) | |
| 16 | 121336 | chr6 | NT_167247.1 | 1173489-1294825 | 7 | 4 | L2 (3) | ERV3-16A3_I-int (2) | MLT1E2 (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 246281 | chr6 | NT_167244.1 | 2009529-2255810 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 228684 | chr6 | NT_167244.1 | 4377889-4606573 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 191189 | chr6 | NT_167244.1 | 3785039-3976228 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 184307 | chr6 | NT_167244.1 | 3171816-3356123 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 178666 | chr6 | NT_167247.1 | 4420283-4598949 | LOC100507722 | hypothetical_protein_LOC100507722 |