| Enzyme: | NgoAVIII | Longest uncut segments |
| Specificity: | GACNNNNNTGA | Repeats in uncut segments |
| Number of sites: | 1233348 | Genes in uncut segments |
| Mean distance between sites: | 2319 base pairs | |
| Standard deviation: | 2390 base pairs | |
| Site density | 431.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 489794 | chr15 | NT_037852.6 | 1397222-1887016 | 0.15 % in | 6 repeats | 0.00 % in | 0 genes |
| 2 | 405774 | chr6 | NT_167244.1 | 2359441-2765215 | 0.35 % in | 6 repeats | 0.00 % in | 0 genes |
| 3 | 210462 | chr6 | NT_167244.1 | 4387695-4598157 | 1.22 % in | 6 repeats | 0.00 % in | 0 genes |
| 4 | 183579 | chr6 | NT_167244.1 | 3789845-3973424 | 1.36 % in | 13 repeats | 0.00 % in | 0 genes |
| 5 | 181055 | chr6 | NT_167244.1 | 3175353-3356408 | 1.70 % in | 25 repeats | 2.81 % in | 2 genes |
| 6 | 176580 | chr6 | NT_167247.1 | 4419325-4595905 | 1.17 % in | 10 repeats | 100.00 % in | 1 genes |
| 7 | 167930 | chr6 | NT_167249.1 | 2136453-2304383 | 1.32 % in | 11 repeats | 0.00 % in | 0 genes |
| 8 | 166074 | chr6 | NT_167247.1 | 1561847-1727921 | 0.62 % in | 6 repeats | 0.67 % in | 1 genes |
| 9 | 161926 | chr6 | NT_167248.1 | 520299-682225 | 1.62 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 150742 | chr9 | NT_008470.19 | 21692872-21843614 | 0.26 % in | 1 repeats | 0.00 % in | 0 genes |
| 11 | 144917 | chr6 | NT_167244.1 | 2893314-3038231 | 0.80 % in | 8 repeats | 0.00 % in | 0 genes |
| 12 | 123176 | chr6 | NT_167247.1 | 1169727-1292903 | 4.22 % in | 11 repeats | 0.00 % in | 0 genes |
| 13 | 119408 | chr6 | NT_167245.1 | 2605756-2725164 | 1.56 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 117277 | chr6 | NT_167246.1 | 3259177-3376454 | 1.06 % in | 9 repeats | 0.00 % in | 0 genes |
| 15 | 111845 | chr6 | NT_167245.1 | 136543-248388 | 3.13 % in | 10 repeats | 0.00 % in | 0 genes |
| 16 | 110852 | chr6 | NT_167244.1 | 587940-698792 | 3.47 % in | 15 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 489794 | chr15 | NT_037852.6 | 1397222-1887016 | 6 | 6 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 405774 | chr6 | NT_167244.1 | 2359441-2765215 | 6 | 5 | LTR84b (2) | MLT1B (1) | L1MEg (1) | |
| 3 | 210462 | chr6 | NT_167244.1 | 4387695-4598157 | 6 | 5 | MER57-int (2) | (TTCC)n (1) | AluY (1) | |
| 4 | 183579 | chr6 | NT_167244.1 | 3789845-3973424 | 13 | 11 | MLT1H-int (2) | L2a (2) | (TA)n (1) | |
| 5 | 181055 | chr6 | NT_167244.1 | 3175353-3356408 | 25 | 15 | L1MB3 (4) | AluSx (4) | GC_rich (3) | |
| 6 | 176580 | chr6 | NT_167247.1 | 4419325-4595905 | 10 | 10 | (TTAAA)n (1) | MIRb (1) | MIR (1) | |
| 7 | 167930 | chr6 | NT_167249.1 | 2136453-2304383 | 11 | 7 | L1MB8 (3) | AluSx (3) | MLT1A (1) | |
| 8 | 166074 | chr6 | NT_167247.1 | 1561847-1727921 | 6 | 5 | MIR (2) | L1MC3 (1) | (GGAA)n (1) | |
| 9 | 161926 | chr6 | NT_167248.1 | 520299-682225 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 150742 | chr9 | NT_008470.19 | 21692872-21843614 | 1 | 1 | L1M5 (1) | |||
| 11 | 144917 | chr6 | NT_167244.1 | 2893314-3038231 | 8 | 7 | AluJo (2) | (TCC)n (1) | L1MC5 (1) | |
| 12 | 123176 | chr6 | NT_167247.1 | 1169727-1292903 | 11 | 7 | L2 (3) | MIRb (2) | ERV3-16A3_I-int (2) | |
| 13 | 119408 | chr6 | NT_167245.1 | 2605756-2725164 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 14 | 117277 | chr6 | NT_167246.1 | 3259177-3376454 | 9 | 6 | AluSx (3) | MIRb (2) | (TTA)n (1) | |
| 15 | 111845 | chr6 | NT_167245.1 | 136543-248388 | 10 | 9 | L2c (2) | (TTTC)n (1) | MLT1F (1) | |
| 16 | 110852 | chr6 | NT_167244.1 | 587940-698792 | 15 | 12 | L1MA9 (3) | L1MC5 (2) | THE1D (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 181055 | chr6 | NT_167244.1 | 3175353-3356408 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 176580 | chr6 | NT_167247.1 | 4419325-4595905 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166074 | chr6 | NT_167247.1 | 1561847-1727921 | LOC100421582 | tripartite_motif-containing_protein_26 |