| Enzyme: | DraRI | Longest uncut segments |
| Specificity: | CAAGNAC | Repeats in uncut segments |
| Number of sites: | 1250002 | Genes in uncut segments |
| Mean distance between sites: | 2289 base pairs | |
| Standard deviation: | 2385 base pairs | |
| Site density | 436.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 489583 | chr15 | NT_037852.6 | 1395796-1885379 | 0.24 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 404556 | chr6 | NT_167244.1 | 2358662-2763218 | 0.30 % in | 5 repeats | 0.00 % in | 0 genes |
| 3 | 218784 | chr6 | NT_167244.1 | 4381228-4600012 | 2.57 % in | 19 repeats | 1.11 % in | 1 genes |
| 4 | 186187 | chr6 | NT_167244.1 | 3787705-3973892 | 1.87 % in | 18 repeats | 0.00 % in | 0 genes |
| 5 | 177671 | chr6 | NT_167244.1 | 3178657-3356328 | 0.29 % in | 7 repeats | 0.96 % in | 2 genes |
| 6 | 174644 | chr6 | NT_167247.1 | 4421773-4596417 | 1.07 % in | 6 repeats | 100.00 % in | 1 genes |
| 7 | 172802 | chr6 | NT_167247.1 | 1557893-1730695 | 2.66 % in | 21 repeats | 2.93 % in | 1 genes |
| 8 | 168210 | chr6 | NT_167249.1 | 2135063-2303273 | 1.25 % in | 9 repeats | 0.00 % in | 0 genes |
| 9 | 167698 | chr6 | NT_167248.1 | 518752-686450 | 4.48 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 162759 | chr7 | NT_023603.5 | 32667-195426 | 100.00 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 157775 | chr6 | NT_167244.1 | 2009145-2166920 | 0.22 % in | 3 repeats | 0.00 % in | 0 genes |
| 12 | 154269 | chr9 | NT_008470.19 | 21689997-21844266 | 1.63 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 149524 | chr6 | NT_167244.1 | 2892950-3042474 | 2.42 % in | 22 repeats | 0.00 % in | 0 genes |
| 14 | 124600 | chr6 | NT_167244.1 | 583589-708189 | 9.43 % in | 41 repeats | 0.00 % in | 0 genes |
| 15 | 120839 | chr6 | NT_167246.1 | 3254646-3375485 | 0.79 % in | 5 repeats | 0.00 % in | 0 genes |
| 16 | 118653 | chr6 | NT_167247.1 | 1174436-1293089 | 2.61 % in | 5 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 489583 | chr15 | NT_037852.6 | 1395796-1885379 | 7 | 7 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 404556 | chr6 | NT_167244.1 | 2358662-2763218 | 5 | 4 | AluJb (2) | L4 (1) | L1MEg (1) | |
| 3 | 218784 | chr6 | NT_167244.1 | 4381228-4600012 | 19 | 14 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 4 | 186187 | chr6 | NT_167244.1 | 3787705-3973892 | 18 | 15 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 5 | 177671 | chr6 | NT_167244.1 | 3178657-3356328 | 7 | 5 | GC_rich (3) | L2a (1) | Charlie4a (1) | |
| 6 | 174644 | chr6 | NT_167247.1 | 4421773-4596417 | 6 | 6 | (TTAAA)n (1) | MLT1J (1) | MER11A (1) | |
| 7 | 172802 | chr6 | NT_167247.1 | 1557893-1730695 | 21 | 17 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 8 | 168210 | chr6 | NT_167249.1 | 2135063-2303273 | 9 | 7 | MLT1A (2) | AluJb (2) | MamGypLTR1b (1) | |
| 9 | 167698 | chr6 | NT_167248.1 | 518752-686450 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 162759 | chr7 | NT_023603.5 | 32667-195426 | 5 | 2 | L1PA2 (4) | ALR/Alpha (1) | ||
| 11 | 157775 | chr6 | NT_167244.1 | 2009145-2166920 | 3 | 3 | MIRb (1) | MER5A1 (1) | L1MC4a (1) | |
| 12 | 154269 | chr9 | NT_008470.19 | 21689997-21844266 | 8 | 6 | LTR67B (2) | L1M4b (2) | MSTA (1) | |
| 13 | 149524 | chr6 | NT_167244.1 | 2892950-3042474 | 22 | 11 | L1MC5 (6) | AluY (3) | AluSc (3) | |
| 14 | 124600 | chr6 | NT_167244.1 | 583589-708189 | 41 | 28 | L2c (3) | L2b (3) | L1MA9 (3) | |
| 15 | 120839 | chr6 | NT_167246.1 | 3254646-3375485 | 5 | 3 | MIRb (2) | AluSx (2) | MIR3 (1) | |
| 16 | 118653 | chr6 | NT_167247.1 | 1174436-1293089 | 5 | 3 | L2 (2) | ERV3-16A3_I-int (2) | LTR16B2 (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 218784 | chr6 | NT_167244.1 | 4381228-4600012 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 177671 | chr6 | NT_167244.1 | 3178657-3356328 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 174644 | chr6 | NT_167247.1 | 4421773-4596417 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 172802 | chr6 | NT_167247.1 | 1557893-1730695 | LOC100421582 | tripartite_motif-containing_protein_26 |