| Enzyme: | BstXI | Longest uncut segments |
| Specificity: | CCANNNNNNTGG | Repeats in uncut segments |
| Number of sites: | 1804908 | Genes in uncut segments |
| Mean distance between sites: | 1585 base pairs | |
| Standard deviation: | 1952 base pairs | |
| Site density | 630.8 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494303 | chr15 | NT_037852.6 | 1397170-1891473 | 0.79 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 401348 | chr6 | NT_167244.1 | 2359932-2761280 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 209069 | chr6 | NT_167244.1 | 4389017-4598086 | 0.57 % in | 6 repeats | 0.00 % in | 0 genes |
| 4 | 182278 | chr6 | NT_167244.1 | 3788696-3970974 | 0.50 % in | 8 repeats | 0.00 % in | 0 genes |
| 5 | 179060 | chr6 | NT_167247.1 | 4418867-4597927 | 1.86 % in | 14 repeats | 100.00 % in | 1 genes |
| 6 | 176506 | chr6 | NT_167244.1 | 3179887-3356393 | 0.24 % in | 5 repeats | 0.31 % in | 2 genes |
| 7 | 167810 | chr6 | NT_167247.1 | 1559567-1727377 | 1.18 % in | 9 repeats | 2.02 % in | 1 genes |
| 8 | 166942 | chr6 | NT_167249.1 | 2136636-2303578 | 0.79 % in | 6 repeats | 0.00 % in | 0 genes |
| 9 | 164886 | chr7 | NT_023603.5 | 29557-194443 | 100.00 % in | 5 repeats | 0.00 % in | 0 genes |
| 10 | 163769 | chr6 | NT_167248.1 | 521239-685008 | 2.72 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 156187 | chr6 | NT_167244.1 | 2008755-2164942 | 0.25 % in | 3 repeats | 0.00 % in | 0 genes |
| 12 | 153654 | chr9 | NT_008470.19 | 21690987-21844641 | 1.09 % in | 9 repeats | 0.00 % in | 0 genes |
| 13 | 142935 | chr6 | NT_167244.1 | 2894599-3037534 | 0.08 % in | 2 repeats | 0.00 % in | 0 genes |
| 14 | 119813 | chr6 | NT_167245.1 | 2603875-2723688 | 1.62 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 117087 | chr6 | NT_167247.1 | 1177313-1294400 | 0.30 % in | 1 repeats | 0.00 % in | 0 genes |
| 16 | 116547 | chr6 | NT_167246.1 | 3258522-3375069 | 0.46 % in | 3 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494303 | chr15 | NT_037852.6 | 1397170-1891473 | 18 | 15 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 401348 | chr6 | NT_167244.1 | 2359932-2761280 | 1 | 1 | AluSp (1) | |||
| 3 | 209069 | chr6 | NT_167244.1 | 4389017-4598086 | 6 | 5 | MER57-int (2) | (TTCC)n (1) | AluY (1) | |
| 4 | 182278 | chr6 | NT_167244.1 | 3788696-3970974 | 8 | 7 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 179060 | chr6 | NT_167247.1 | 4418867-4597927 | 14 | 12 | MLT1J (2) | AluSx (2) | (TTAAA)n (1) | |
| 6 | 176506 | chr6 | NT_167244.1 | 3179887-3356393 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 167810 | chr6 | NT_167247.1 | 1559567-1727377 | 9 | 8 | Tigger7 (2) | MIRc (1) | MIR (1) | |
| 8 | 166942 | chr6 | NT_167249.1 | 2136636-2303578 | 6 | 6 | MamGypLTR1b (1) | L1MC4a (1) | L1MB8 (1) | |
| 9 | 164886 | chr7 | NT_023603.5 | 29557-194443 | 5 | 2 | L1PA2 (3) | ALR/Alpha (2) | ||
| 10 | 163769 | chr6 | NT_167248.1 | 521239-685008 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 156187 | chr6 | NT_167244.1 | 2008755-2164942 | 3 | 3 | MIRb (1) | MIR (1) | AluSx (1) | |
| 12 | 153654 | chr9 | NT_008470.19 | 21690987-21844641 | 9 | 7 | LTR67B (2) | L2 (2) | MSTA (1) | |
| 13 | 142935 | chr6 | NT_167244.1 | 2894599-3037534 | 2 | 2 | AluY (1) | AluSg1 (1) | ||
| 14 | 119813 | chr6 | NT_167245.1 | 2603875-2723688 | 5 | 5 | MLT1N2 (1) | MER5B (1) | MER5A1 (1) | |
| 15 | 117087 | chr6 | NT_167247.1 | 1177313-1294400 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 16 | 116547 | chr6 | NT_167246.1 | 3258522-3375069 | 3 | 3 | MIRb (1) | MIR3 (1) | AluSx (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 179060 | chr6 | NT_167247.1 | 4418867-4597927 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 176506 | chr6 | NT_167244.1 | 3179887-3356393 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 167810 | chr6 | NT_167247.1 | 1559567-1727377 | LOC100421582 | tripartite_motif-containing_protein_26 |