| Enzyme: | Eco57I | Longest uncut segments |
| Specificity: | CTGAAG | Repeats in uncut segments |
| Number of sites: | 2145295 | Genes in uncut segments |
| Mean distance between sites: | 1333 base pairs | |
| Standard deviation: | 1412 base pairs | |
| Site density | 749.7 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 486787 | chr15 | NT_037852.6 | 1398513-1885300 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 402101 | chr6 | NT_167244.1 | 2359494-2761595 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 211869 | chr6 | NT_167244.1 | 4388997-4600866 | 1.37 % in | 14 repeats | 0.00 % in | 0 genes |
| 4 | 183274 | chr6 | NT_167244.1 | 3788310-3971584 | 0.97 % in | 10 repeats | 0.00 % in | 0 genes |
| 5 | 177468 | chr6 | NT_167244.1 | 3178114-3355582 | 0.46 % in | 9 repeats | 1.19 % in | 1 genes |
| 6 | 174877 | chr6 | NT_167247.1 | 4421289-4596166 | 1.00 % in | 7 repeats | 100.00 % in | 1 genes |
| 7 | 165695 | chr6 | NT_167247.1 | 1561189-1726884 | 0.61 % in | 3 repeats | 1.06 % in | 1 genes |
| 8 | 165366 | chr6 | NT_167249.1 | 2138057-2303423 | 0.12 % in | 3 repeats | 0.00 % in | 0 genes |
| 9 | 159758 | chr6 | NT_167248.1 | 521657-681415 | 0.28 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 152580 | chr9 | NT_008470.19 | 21691493-21844073 | 0.89 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 144988 | chr6 | NT_167244.1 | 2893756-3038744 | 1.10 % in | 10 repeats | 0.00 % in | 0 genes |
| 12 | 120765 | chr6 | NT_167244.1 | 578911-699676 | 9.45 % in | 33 repeats | 0.00 % in | 0 genes |
| 13 | 119796 | chr6 | NT_167245.1 | 2606208-2726004 | 1.52 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 115775 | chr6 | NT_167247.1 | 1177643-1293418 | 0.02 % in | 1 repeats | 0.00 % in | 0 genes |
| 15 | 113940 | chr6 | NT_167246.1 | 3261211-3375151 | 0.38 % in | 3 repeats | 0.00 % in | 0 genes |
| 16 | 113317 | chr6 | NT_167245.1 | 133013-246330 | 2.73 % in | 8 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 486787 | chr15 | NT_037852.6 | 1398513-1885300 | 1 | 1 | AT_rich (1) | |||
| 2 | 402101 | chr6 | NT_167244.1 | 2359494-2761595 | 1 | 1 | AluSp (1) | |||
| 3 | 211869 | chr6 | NT_167244.1 | 4388997-4600866 | 14 | 11 | MER57-int (2) | AluSx (2) | AluSg/x (2) | |
| 4 | 183274 | chr6 | NT_167244.1 | 3788310-3971584 | 10 | 9 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 177468 | chr6 | NT_167244.1 | 3178114-3355582 | 9 | 7 | GC_rich (3) | LTR23 (1) | L2a (1) | |
| 6 | 174877 | chr6 | NT_167247.1 | 4421289-4596166 | 7 | 7 | (TTAAA)n (1) | MLT1J (1) | MIR (1) | |
| 7 | 165695 | chr6 | NT_167247.1 | 1561189-1726884 | 3 | 3 | MIRc (1) | L1MC3 (1) | A-rich (1) | |
| 8 | 165366 | chr6 | NT_167249.1 | 2138057-2303423 | 3 | 3 | L1MB8 (1) | AT_rich (1) | AluSx (1) | |
| 9 | 159758 | chr6 | NT_167248.1 | 521657-681415 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 152580 | chr9 | NT_008470.19 | 21691493-21844073 | 5 | 4 | LTR67B (2) | MSTA (1) | MIR3 (1) | |
| 11 | 144988 | chr6 | NT_167244.1 | 2893756-3038744 | 10 | 7 | L1MC5 (2) | AluSc (2) | AluJo (2) | |
| 12 | 120765 | chr6 | NT_167244.1 | 578911-699676 | 33 | 26 | L1MA9 (3) | L1M5 (3) | L1PA7 (2) | |
| 13 | 119796 | chr6 | NT_167245.1 | 2606208-2726004 | 5 | 4 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 14 | 115775 | chr6 | NT_167247.1 | 1177643-1293418 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 15 | 113940 | chr6 | NT_167246.1 | 3261211-3375151 | 3 | 2 | MIRb (2) | AluSx (1) | ||
| 16 | 113317 | chr6 | NT_167245.1 | 133013-246330 | 8 | 8 | tRNA-Ala-GCY_ (1) | MLT1F (1) | MLT1E2 (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 177468 | chr6 | NT_167244.1 | 3178114-3355582 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 174877 | chr6 | NT_167247.1 | 4421289-4596166 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 165695 | chr6 | NT_167247.1 | 1561189-1726884 | LOC100421582 | tripartite_motif-containing_protein_26 |