| Enzyme: | NhaXI | Longest uncut segments |
| Specificity: | CAAGRAG | Repeats in uncut segments |
| Number of sites: | 1067863 | Genes in uncut segments |
| Mean distance between sites: | 2679 base pairs | |
| Standard deviation: | 2824 base pairs | |
| Site density | 373.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 491088 | chr15 | NT_037852.6 | 1396628-1887716 | 0.28 % in | 9 repeats | 0.00 % in | 0 genes |
| 2 | 404940 | chr6 | NT_167244.1 | 2356876-2761816 | 0.55 % in | 9 repeats | 0.00 % in | 0 genes |
| 3 | 218500 | chr6 | NT_167244.1 | 4385937-4604437 | 4.21 % in | 21 repeats | 0.00 % in | 0 genes |
| 4 | 182548 | chr6 | NT_167244.1 | 3788057-3970605 | 0.47 % in | 6 repeats | 0.00 % in | 0 genes |
| 5 | 181605 | chr6 | NT_167244.1 | 3174869-3356474 | 1.70 % in | 25 repeats | 3.11 % in | 2 genes |
| 6 | 174445 | chr6 | NT_167247.1 | 4420521-4594966 | 0.71 % in | 6 repeats | 100.00 % in | 1 genes |
| 7 | 167143 | chr6 | NT_167249.1 | 2138176-2305319 | 1.03 % in | 8 repeats | 0.00 % in | 0 genes |
| 8 | 166192 | chr6 | NT_167247.1 | 1561538-1727730 | 0.72 % in | 6 repeats | 0.85 % in | 1 genes |
| 9 | 160843 | chr6 | NT_167248.1 | 521672-682515 | 0.95 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 158762 | chr6 | NT_167244.1 | 2009912-2168674 | 0.76 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 156394 | chr9 | NT_008470.19 | 21691125-21847519 | 1.72 % in | 13 repeats | 0.00 % in | 0 genes |
| 12 | 145665 | chr6 | NT_167244.1 | 2893827-3039492 | 1.60 % in | 14 repeats | 0.00 % in | 0 genes |
| 13 | 119562 | chr6 | NT_167247.1 | 1173706-1293268 | 3.20 % in | 7 repeats | 0.00 % in | 0 genes |
| 14 | 118569 | chr6 | NT_167245.1 | 2605886-2724455 | 0.87 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 117223 | chr10 | NT_008705.16 | 38711713-38828936 | 26.54 % in | 213 repeats | 0.00 % in | 0 genes |
| 16 | 116298 | chr6 | NT_167246.1 | 3259454-3375752 | 0.56 % in | 4 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 491088 | chr15 | NT_037852.6 | 1396628-1887716 | 9 | 9 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 404940 | chr6 | NT_167244.1 | 2356876-2761816 | 9 | 7 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 218500 | chr6 | NT_167244.1 | 4385937-4604437 | 21 | 13 | MER57-int (3) | HERVH-int (3) | AluSx (3) | |
| 4 | 182548 | chr6 | NT_167244.1 | 3788057-3970605 | 6 | 5 | AT_rich (2) | MIR (1) | MER52D (1) | |
| 5 | 181605 | chr6 | NT_167244.1 | 3174869-3356474 | 25 | 15 | L1MB3 (4) | AluSx (4) | GC_rich (3) | |
| 6 | 174445 | chr6 | NT_167247.1 | 4420521-4594966 | 6 | 6 | MIR (1) | MER11A (1) | L2b (1) | |
| 7 | 167143 | chr6 | NT_167249.1 | 2138176-2305319 | 8 | 4 | L1MB8 (3) | AluSx (3) | Charlie2b (1) | |
| 8 | 166192 | chr6 | NT_167247.1 | 1561538-1727730 | 6 | 5 | MIR (2) | L1MC3 (1) | (GGAA)n (1) | |
| 9 | 160843 | chr6 | NT_167248.1 | 521672-682515 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 158762 | chr6 | NT_167244.1 | 2009912-2168674 | 5 | 5 | MIR (1) | MER5A1 (1) | L1ME3C (1) | |
| 11 | 156394 | chr9 | NT_008470.19 | 21691125-21847519 | 13 | 10 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 12 | 145665 | chr6 | NT_167244.1 | 2893827-3039492 | 14 | 8 | L1MC5 (4) | AluSc (3) | AluJo (2) | |
| 13 | 119562 | chr6 | NT_167247.1 | 1173706-1293268 | 7 | 4 | L2 (3) | ERV3-16A3_I-int (2) | MLT1E2 (1) | |
| 14 | 118569 | chr6 | NT_167245.1 | 2605886-2724455 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 117223 | chr10 | NT_008705.16 | 38711713-38828936 | 213 | 27 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 16 | 116298 | chr6 | NT_167246.1 | 3259454-3375752 | 4 | 3 | MIRb (2) | MIR3 (1) | AluSx (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 181605 | chr6 | NT_167244.1 | 3174869-3356474 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 174445 | chr6 | NT_167247.1 | 4420521-4594966 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166192 | chr6 | NT_167247.1 | 1561538-1727730 | LOC100421582 | tripartite_motif-containing_protein_26 |