| Enzyme: | BlpI | Longest uncut segments |
| Specificity: | GCTNAGC | Repeats in uncut segments |
| Number of sites: | 524121 | Genes in uncut segments |
| Mean distance between sites: | 5459 base pairs | |
| Standard deviation: | 6564 base pairs | |
| Site density | 183.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 503206 | chr15 | NT_037852.6 | 1387128-1890334 | 2.34 % in | 31 repeats | 0.00 % in | 0 genes |
| 2 | 407823 | chr6 | NT_167244.1 | 2359595-2767418 | 0.71 % in | 11 repeats | 0.00 % in | 0 genes |
| 3 | 340275 | chr19 | NT_011109.16 | 1-340276 | 99.77 % in | 86 repeats | 0.00 % in | 0 genes |
| 4 | 302742 | chr7 | NT_007933.15 | 110481-413223 | 99.73 % in | 59 repeats | 0.00 % in | 0 genes |
| 5 | 258476 | chr11 | NT_009237.18 | 48584871-48843347 | 94.55 % in | 84 repeats | 0.38 % in | 1 genes |
| 6 | 220247 | chr6 | NT_167244.1 | 4378447-4598694 | 2.98 % in | 22 repeats | 2.36 % in | 1 genes |
| 7 | 214000 | chrX | NT_011630.14 | 5852861-6066861 | 99.59 % in | 48 repeats | 0.00 % in | 0 genes |
| 8 | 208692 | chr7 | NT_023603.5 | 14981-223673 | 97.89 % in | 27 repeats | 0.00 % in | 0 genes |
| 9 | 201051 | chrX | NT_011669.17 | 1-201052 | 99.67 % in | 25 repeats | 0.00 % in | 0 genes |
| 10 | 194871 | chr6 | NT_167249.1 | 2116543-2311414 | 8.25 % in | 78 repeats | 0.00 % in | 0 genes |
| 11 | 193426 | chr12 | NT_029419.12 | 131689-325115 | 99.57 % in | 34 repeats | 0.00 % in | 0 genes |
| 12 | 191277 | chr6 | NT_167244.1 | 3789382-3980659 | 3.52 % in | 27 repeats | 0.00 % in | 0 genes |
| 13 | 182249 | chr11 | NT_009237.18 | 50535490-50717739 | 99.81 % in | 28 repeats | 0.00 % in | 0 genes |
| 14 | 182239 | chr6 | NT_167244.1 | 3177679-3359918 | 1.82 % in | 20 repeats | 0.00 % in | 0 genes |
| 15 | 179686 | chr6 | NT_167247.1 | 1558415-1738101 | 5.75 % in | 36 repeats | 0.00 % in | 0 genes |
| 16 | 177586 | chr6 | NT_167247.1 | 4421987-4599573 | 2.03 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 503206 | chr15 | NT_037852.6 | 1387128-1890334 | 31 | 22 | L1MDa (6) | L2a (3) | L1M5 (2) | |
| 2 | 407823 | chr6 | NT_167244.1 | 2359595-2767418 | 11 | 8 | AluY (3) | LTR84b (2) | MLT1B (1) | |
| 3 | 340275 | chr19 | NT_011109.16 | 1-340276 | 86 | 17 | ALR/Alpha (49) | L1PA3 (14) | L1PA4 (6) | |
| 4 | 302742 | chr7 | NT_007933.15 | 110481-413223 | 59 | 10 | ALR/Alpha (36) | L1PA4 (8) | AluY (5) | |
| 5 | 258476 | chr11 | NT_009237.18 | 48584871-48843347 | 84 | 32 | ALR/Alpha (28) | L1PA4 (7) | L1PA2 (4) | |
| 6 | 220247 | chr6 | NT_167244.1 | 4378447-4598694 | 22 | 15 | MER57-int (3) | HUERS-P3-int (3) | AluSx (3) | |
| 7 | 214000 | chrX | NT_011630.14 | 5852861-6066861 | 48 | 11 | ALR/Alpha (26) | GSATX (9) | L1PA4 (3) | |
| 8 | 208692 | chr7 | NT_023603.5 | 14981-223673 | 27 | 17 | L1PA2 (4) | ALR/Alpha (4) | AT_rich (3) | |
| 9 | 201051 | chrX | NT_011669.17 | 1-201052 | 25 | 6 | ALR/Alpha (14) | L1PA3 (4) | L1PA2 (4) | |
| 10 | 194871 | chr6 | NT_167249.1 | 2116543-2311414 | 78 | 41 | AluSx (10) | Charlie2b (6) | AluJb (5) | |
| 11 | 193426 | chr12 | NT_029419.12 | 131689-325115 | 34 | 13 | ALR/Alpha (15) | L1PA3 (8) | (TTA)n (1) | |
| 12 | 191277 | chr6 | NT_167244.1 | 3789382-3980659 | 27 | 20 | L2a (6) | MLT1H-int (2) | L1M5 (2) | |
| 13 | 182249 | chr11 | NT_009237.18 | 50535490-50717739 | 28 | 8 | ALR/Alpha (13) | L1PA3 (7) | L1PA4 (3) | |
| 14 | 182239 | chr6 | NT_167244.1 | 3177679-3359918 | 20 | 13 | GC_rich (3) | MIRb (2) | LTR23 (2) | |
| 15 | 179686 | chr6 | NT_167247.1 | 1558415-1738101 | 36 | 26 | L1PB2 (4) | Tigger7 (2) | MSTD (2) | |
| 16 | 177586 | chr6 | NT_167247.1 | 4421987-4599573 | 16 | 12 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 258476 | chr11 | NT_009237.18 | 48584871-48843347 | OR4A44P | |
| 6 | 220247 | chr6 | NT_167244.1 | 4378447-4598694 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |