| Enzyme: | Van91II | Longest uncut segments |
| Specificity: | GAATTC | Repeats in uncut segments |
| Number of sites: | 778599 | Genes in uncut segments |
| Mean distance between sites: | 3674 base pairs | |
| Standard deviation: | 3884 base pairs | |
| Site density | 272.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 406628 | chr6 | NT_167244.1 | 2356218-2762846 | 0.73 % in | 13 repeats | 0.00 % in | 0 genes |
| 2 | 212218 | chr6 | NT_167244.1 | 4389562-4601780 | 1.53 % in | 13 repeats | 0.00 % in | 0 genes |
| 3 | 196983 | chr6 | NT_167244.1 | 3169821-3366804 | 5.13 % in | 56 repeats | 10.67 % in | 2 genes |
| 4 | 189903 | chr6 | NT_167249.1 | 2117833-2307736 | 7.18 % in | 65 repeats | 0.00 % in | 0 genes |
| 5 | 183695 | chr6 | NT_167244.1 | 3786957-3970652 | 0.49 % in | 7 repeats | 0.29 % in | 1 genes |
| 6 | 174648 | chr6 | NT_167247.1 | 4421551-4596199 | 0.96 % in | 6 repeats | 100.00 % in | 1 genes |
| 7 | 174281 | chr6 | NT_167244.1 | 2869024-3043305 | 11.20 % in | 99 repeats | 5.38 % in | 4 genes |
| 8 | 172026 | chr6 | NT_167247.1 | 1555804-1727830 | 2.71 % in | 24 repeats | 4.16 % in | 1 genes |
| 9 | 168130 | chr6 | NT_167246.1 | 3060724-3228854 | 10.53 % in | 72 repeats | 0.00 % in | 0 genes |
| 10 | 167253 | chr9 | NT_008470.19 | 21676075-21843328 | 5.02 % in | 30 repeats | 0.00 % in | 0 genes |
| 11 | 165397 | chr6 | NT_167248.1 | 516583-681980 | 3.68 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 159314 | chr6 | NT_167244.1 | 2006446-2165760 | 1.07 % in | 7 repeats | 0.00 % in | 0 genes |
| 13 | 126119 | chrY | NT_011875.12 | 8494982-8621101 | 60.30 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 123632 | chr6 | NT_167247.1 | 1174113-1297745 | 3.93 % in | 10 repeats | 0.00 % in | 0 genes |
| 15 | 119918 | chrX | NT_011786.16 | 4273267-4393185 | 10.07 % in | 64 repeats | 0.00 % in | 0 genes |
| 16 | 119629 | chr6 | NT_167245.1 | 2604399-2724028 | 1.40 % in | 6 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 406628 | chr6 | NT_167244.1 | 2356218-2762846 | 13 | 10 | AluJb (3) | L4 (2) | MLT2D (1) | |
| 2 | 212218 | chr6 | NT_167244.1 | 4389562-4601780 | 13 | 10 | HERVH-int (2) | AluSx (2) | AluSg/x (2) | |
| 3 | 196983 | chr6 | NT_167244.1 | 3169821-3366804 | 56 | 26 | AluSx (9) | MIR (4) | L2b (4) | |
| 4 | 189903 | chr6 | NT_167249.1 | 2117833-2307736 | 65 | 34 | AluSx (9) | Charlie2b (6) | AluJb (5) | |
| 5 | 183695 | chr6 | NT_167244.1 | 3786957-3970652 | 7 | 6 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 6 | 174648 | chr6 | NT_167247.1 | 4421551-4596199 | 6 | 6 | (TTAAA)n (1) | MLT1J (1) | MER11A (1) | |
| 7 | 174281 | chr6 | NT_167244.1 | 2869024-3043305 | 99 | 33 | AluSx (14) | AluJo (11) | AluY (8) | |
| 8 | 172026 | chr6 | NT_167247.1 | 1555804-1727830 | 24 | 19 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 9 | 168130 | chr6 | NT_167246.1 | 3060724-3228854 | 72 | 33 | AluSx (10) | AluY (8) | AluJb (7) | |
| 10 | 167253 | chr9 | NT_008470.19 | 21676075-21843328 | 30 | 22 | L1M5 (3) | MLT1G1 (2) | MER5B (2) | |
| 11 | 165397 | chr6 | NT_167248.1 | 516583-681980 | 4 | 4 | LTR7 (1) | L1PREC2 (1) | L1P4 (1) | |
| 12 | 159314 | chr6 | NT_167244.1 | 2006446-2165760 | 7 | 5 | AluSx (3) | MIRb (1) | MIR (1) | |
| 13 | 126119 | chrY | NT_011875.12 | 8494982-8621101 | 5 | 2 | LTR12B (4) | LTR12D (1) | ||
| 14 | 123632 | chr6 | NT_167247.1 | 1174113-1297745 | 10 | 7 | ERV3-16A3_I-int (3) | L2 (2) | MLT1E2 (1) | |
| 15 | 119918 | chrX | NT_011786.16 | 4273267-4393185 | 64 | 16 | MER33 (14) | AluSx (13) | AluSc (13) | |
| 16 | 119629 | chr6 | NT_167245.1 | 2604399-2724028 | 6 | 6 | MLT1N2 (1) | MLT1E2 (1) | MER5B (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 196983 | chr6 | NT_167244.1 | 3169821-3366804 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 5 | 183695 | chr6 | NT_167244.1 | 3786957-3970652 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 174648 | chr6 | NT_167247.1 | 4421551-4596199 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 174281 | chr6 | NT_167244.1 | 2869024-3043305 | LST1 | leukocyte-specific_transcript_1_protein_isoform_5 |
| NCR3 | natural_cytotoxicity_triggering_receptor_3_isoform_c | |||||
| UQCRHP1 | ||||||
| MSH5 | mutS_protein_homolog_5_isoform_c | |||||
| 8 | 172026 | chr6 | NT_167247.1 | 1555804-1727830 | LOC100421582 | tripartite_motif-containing_protein_26 |