| Enzyme: | MscI | Longest uncut segments |
| Specificity: | TGGCCA | Repeats in uncut segments |
| Number of sites: | 1296892 | Genes in uncut segments |
| Mean distance between sites: | 2206 base pairs | |
| Standard deviation: | 2513 base pairs | |
| Site density | 453.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490107 | chr15 | NT_037852.6 | 1397710-1887817 | 0.16 % in | 6 repeats | 0.00 % in | 0 genes |
| 2 | 404820 | chr6 | NT_167244.1 | 2357901-2762721 | 0.45 % in | 9 repeats | 0.00 % in | 0 genes |
| 3 | 246260 | chr6 | NT_167244.1 | 2008701-2254961 | 0.95 % in | 12 repeats | 2.06 % in | 2 genes |
| 4 | 214151 | chr6 | NT_167244.1 | 4386536-4600687 | 2.42 % in | 18 repeats | 0.00 % in | 0 genes |
| 5 | 190341 | chr6 | NT_167244.1 | 3781997-3972338 | 2.51 % in | 20 repeats | 2.89 % in | 1 genes |
| 6 | 179744 | chr6 | NT_167244.1 | 3177021-3356765 | 1.10 % in | 20 repeats | 2.11 % in | 2 genes |
| 7 | 175231 | chr6 | NT_167247.1 | 4420635-4595866 | 1.02 % in | 8 repeats | 100.00 % in | 1 genes |
| 8 | 172157 | chr6 | NT_167247.1 | 1559921-1732078 | 2.14 % in | 17 repeats | 1.76 % in | 1 genes |
| 9 | 167458 | chr6 | NT_167249.1 | 2136066-2303524 | 1.08 % in | 9 repeats | 0.00 % in | 0 genes |
| 10 | 164028 | chrY | NT_011875.12 | 8555055-8719083 | 69.38 % in | 20 repeats | 0.00 % in | 0 genes |
| 11 | 163483 | chr6 | NT_167248.1 | 521836-685319 | 2.55 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 154823 | chr7 | NT_023603.5 | 39589-194412 | 100.00 % in | 2 repeats | 0.00 % in | 0 genes |
| 13 | 151166 | chr9 | NT_008470.19 | 21692803-21843969 | 0.35 % in | 3 repeats | 0.00 % in | 0 genes |
| 14 | 143435 | chr6 | NT_167244.1 | 2894047-3037482 | 0.21 % in | 2 repeats | 0.00 % in | 0 genes |
| 15 | 125472 | chr1 | NT_077389.3 | 264175-389647 | 99.30 % in | 57 repeats | 0.00 % in | 0 genes |
| 16 | 125092 | chr14 | NT_026437.12 | 196010-321102 | 99.29 % in | 10 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490107 | chr15 | NT_037852.6 | 1397710-1887817 | 6 | 6 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 404820 | chr6 | NT_167244.1 | 2357901-2762721 | 9 | 7 | L4 (2) | AluJb (2) | L1MEg (1) | |
| 3 | 246260 | chr6 | NT_167244.1 | 2008701-2254961 | 12 | 10 | MIRb (2) | MIR (2) | MER5A1 (1) | |
| 4 | 214151 | chr6 | NT_167244.1 | 4386536-4600687 | 18 | 13 | MER57-int (3) | AluSx (3) | AluSg/x (2) | |
| 5 | 190341 | chr6 | NT_167244.1 | 3781997-3972338 | 20 | 14 | L2a (3) | MLT1H-int (2) | AT_rich (2) | |
| 6 | 179744 | chr6 | NT_167244.1 | 3177021-3356765 | 20 | 13 | AluSx (4) | GC_rich (3) | MER44B (2) | |
| 7 | 175231 | chr6 | NT_167247.1 | 4420635-4595866 | 8 | 8 | (TTAAA)n (1) | MIR (1) | MER11A (1) | |
| 8 | 172157 | chr6 | NT_167247.1 | 1559921-1732078 | 17 | 14 | Tigger7 (2) | MIR (2) | L1MEe (2) | |
| 9 | 167458 | chr6 | NT_167249.1 | 2136066-2303524 | 9 | 8 | AluSx (2) | MLT1A (1) | MamGypLTR1b (1) | |
| 10 | 164028 | chrY | NT_011875.12 | 8555055-8719083 | 20 | 9 | LTR12B (9) | L1PA16 (4) | (TATAA)n (1) | |
| 11 | 163483 | chr6 | NT_167248.1 | 521836-685319 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 154823 | chr7 | NT_023603.5 | 39589-194412 | 2 | 2 | L1PA2 (1) | ALR/Alpha (1) | ||
| 13 | 151166 | chr9 | NT_008470.19 | 21692803-21843969 | 3 | 3 | MIR3 (1) | LTR67B (1) | L1M5 (1) | |
| 14 | 143435 | chr6 | NT_167244.1 | 2894047-3037482 | 2 | 2 | AluSg1 (1) | AluSc (1) | ||
| 15 | 125472 | chr1 | NT_077389.3 | 264175-389647 | 57 | 5 | ALR/Alpha (52) | MLT1J (2) | L2 (1) | |
| 16 | 125092 | chr14 | NT_026437.12 | 196010-321102 | 10 | 7 | CER (4) | MER94 (1) | L1PA4 (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 246260 | chr6 | NT_167244.1 | 2008701-2254961 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 190341 | chr6 | NT_167244.1 | 3781997-3972338 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 179744 | chr6 | NT_167244.1 | 3177021-3356765 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 175231 | chr6 | NT_167247.1 | 4420635-4595866 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 172157 | chr6 | NT_167247.1 | 1559921-1732078 | LOC100421582 | tripartite_motif-containing_protein_26 |