| Enzyme: | BsaAI | Longest uncut segments |
| Specificity: | YACGTR | Repeats in uncut segments |
| Number of sites: | 692540 | Genes in uncut segments |
| Mean distance between sites: | 4131 base pairs | |
| Standard deviation: | 4481 base pairs | |
| Site density | 242.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 498665 | chr15 | NT_037852.6 | 1397851-1896516 | 0.86 % in | 19 repeats | 0.69 % in | 1 genes |
| 2 | 411599 | chr6 | NT_167244.1 | 2357142-2768741 | 1.32 % in | 22 repeats | 0.00 % in | 0 genes |
| 3 | 250564 | chr6 | NT_167244.1 | 2005459-2256023 | 2.11 % in | 22 repeats | 2.77 % in | 3 genes |
| 4 | 212312 | chr6 | NT_167244.1 | 4386201-4598513 | 2.04 % in | 13 repeats | 0.00 % in | 0 genes |
| 5 | 184960 | chr6 | NT_167244.1 | 3788581-3973541 | 1.63 % in | 17 repeats | 0.00 % in | 0 genes |
| 6 | 176910 | chr6 | NT_167247.1 | 1558999-1735909 | 4.44 % in | 29 repeats | 2.23 % in | 1 genes |
| 7 | 176173 | chr6 | NT_167247.1 | 4421639-4597812 | 1.41 % in | 9 repeats | 100.00 % in | 1 genes |
| 8 | 175095 | chr6 | NT_167244.1 | 3180260-3355355 | 0.03 % in | 1 repeats | 0.00 % in | 0 genes |
| 9 | 167088 | chr6 | NT_167249.1 | 2137610-2304698 | 0.89 % in | 9 repeats | 0.00 % in | 0 genes |
| 10 | 162324 | chr6 | NT_167248.1 | 521242-683566 | 1.86 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 158944 | chr7 | NT_023603.5 | 37090-196034 | 100.00 % in | 3 repeats | 0.00 % in | 0 genes |
| 12 | 158343 | chr9 | NT_008470.19 | 21691305-21849648 | 1.90 % in | 14 repeats | 0.00 % in | 0 genes |
| 13 | 147562 | chr6 | NT_167244.1 | 2893709-3041271 | 2.24 % in | 20 repeats | 0.00 % in | 0 genes |
| 14 | 127815 | chr6 | NT_167245.1 | 2600450-2728265 | 5.82 % in | 21 repeats | 0.00 % in | 0 genes |
| 15 | 125212 | chr6 | NT_167244.1 | 1444668-1569880 | 12.61 % in | 40 repeats | 0.00 % in | 0 genes |
| 16 | 124587 | chr6 | NT_167247.1 | 1167911-1292498 | 4.23 % in | 12 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 498665 | chr15 | NT_037852.6 | 1397851-1896516 | 19 | 15 | L2a (3) | MER44C (2) | L1M5 (2) | |
| 2 | 411599 | chr6 | NT_167244.1 | 2357142-2768741 | 22 | 16 | AluY (3) | LTR84b (2) | L4 (2) | |
| 3 | 250564 | chr6 | NT_167244.1 | 2005459-2256023 | 22 | 16 | AluSx (4) | MIRb (2) | MIR (2) | |
| 4 | 212312 | chr6 | NT_167244.1 | 4386201-4598513 | 13 | 9 | MER57-int (3) | AluY (2) | AluSx (2) | |
| 5 | 184960 | chr6 | NT_167244.1 | 3788581-3973541 | 17 | 14 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 6 | 176910 | chr6 | NT_167247.1 | 1558999-1735909 | 29 | 22 | Tigger7 (2) | MSTD (2) | MSTB (2) | |
| 7 | 176173 | chr6 | NT_167247.1 | 4421639-4597812 | 9 | 7 | MLT1J (2) | AluSx (2) | (TTAAA)n (1) | |
| 8 | 175095 | chr6 | NT_167244.1 | 3180260-3355355 | 1 | 1 | AluSp (1) | |||
| 9 | 167088 | chr6 | NT_167249.1 | 2137610-2304698 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 10 | 162324 | chr6 | NT_167248.1 | 521242-683566 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 158944 | chr7 | NT_023603.5 | 37090-196034 | 3 | 2 | L1PA2 (2) | ALR/Alpha (1) | ||
| 12 | 158343 | chr9 | NT_008470.19 | 21691305-21849648 | 14 | 10 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 13 | 147562 | chr6 | NT_167244.1 | 2893709-3041271 | 20 | 10 | L1MC5 (6) | AluSc (3) | L2c (2) | |
| 14 | 127815 | chr6 | NT_167245.1 | 2600450-2728265 | 21 | 17 | Tigger1 (2) | MLT1N2 (2) | MER21C (2) | |
| 15 | 125212 | chr6 | NT_167244.1 | 1444668-1569880 | 40 | 23 | L1MA1 (7) | AluY (4) | L4 (3) | |
| 16 | 124587 | chr6 | NT_167247.1 | 1167911-1292498 | 12 | 8 | L2 (3) | MIRb (2) | ERV3-16A3_I-int (2) | |
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 498665 | chr15 | NT_037852.6 | 1397851-1896516 | LOC100418897 | |
| 3 | 250564 | chr6 | NT_167244.1 | 2005459-2256023 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 6 | 176910 | chr6 | NT_167247.1 | 1558999-1735909 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 7 | 176173 | chr6 | NT_167247.1 | 4421639-4597812 | LOC100507722 | hypothetical_protein_LOC100507722 |