| Enzyme: | TdeII | Longest uncut segments |
| Specificity: | CTCTTC | Repeats in uncut segments |
| Number of sites: | 2259021 | Genes in uncut segments |
| Mean distance between sites: | 1266 base pairs | |
| Standard deviation: | 1391 base pairs | |
| Site density | 789.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 488340 | chr15 | NT_037852.6 | 1397488-1885828 | 0.09 % in | 4 repeats | 0.00 % in | 0 genes |
| 2 | 405548 | chr6 | NT_167244.1 | 2356225-2761773 | 0.68 % in | 12 repeats | 0.00 % in | 0 genes |
| 3 | 213540 | chr6 | NT_167244.1 | 4388953-4602493 | 2.14 % in | 15 repeats | 0.00 % in | 0 genes |
| 4 | 181870 | chr6 | NT_167244.1 | 3788772-3970642 | 0.32 % in | 6 repeats | 0.00 % in | 0 genes |
| 5 | 176718 | chr6 | NT_167244.1 | 3179754-3356472 | 0.26 % in | 6 repeats | 0.43 % in | 2 genes |
| 6 | 174690 | chr6 | NT_167247.1 | 4421540-4596230 | 0.97 % in | 6 repeats | 100.00 % in | 1 genes |
| 7 | 167301 | chr6 | NT_167249.1 | 2135748-2303049 | 1.12 % in | 9 repeats | 0.00 % in | 0 genes |
| 8 | 165374 | chr6 | NT_167247.1 | 1561475-1726849 | 0.44 % in | 2 repeats | 0.89 % in | 1 genes |
| 9 | 163140 | chr6 | NT_167248.1 | 519530-682670 | 2.35 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 156850 | chr6 | NT_167244.1 | 2007747-2164597 | 0.79 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 151219 | chr9 | NT_008470.19 | 21693212-21844431 | 0.08 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 144702 | chr6 | NT_167244.1 | 2893815-3038517 | 0.94 % in | 9 repeats | 0.00 % in | 0 genes |
| 13 | 118988 | chr6 | NT_167245.1 | 2606156-2725144 | 1.22 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 116813 | chr6 | NT_167247.1 | 1176804-1293617 | 0.74 % in | 1 repeats | 0.00 % in | 0 genes |
| 15 | 115876 | chr6 | NT_167246.1 | 3259828-3375704 | 0.56 % in | 4 repeats | 0.00 % in | 0 genes |
| 16 | 112427 | chr6 | NT_167245.1 | 135649-248076 | 3.31 % in | 10 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 488340 | chr15 | NT_037852.6 | 1397488-1885828 | 4 | 4 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 405548 | chr6 | NT_167244.1 | 2356225-2761773 | 12 | 9 | AluJb (3) | L4 (2) | MLT2D (1) | |
| 3 | 213540 | chr6 | NT_167244.1 | 4388953-4602493 | 15 | 11 | MER57-int (2) | HERVH-int (2) | AluSx (2) | |
| 4 | 181870 | chr6 | NT_167244.1 | 3788772-3970642 | 6 | 5 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 176718 | chr6 | NT_167244.1 | 3179754-3356472 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 174690 | chr6 | NT_167247.1 | 4421540-4596230 | 6 | 6 | (TTAAA)n (1) | MLT1J (1) | MER11A (1) | |
| 7 | 167301 | chr6 | NT_167249.1 | 2135748-2303049 | 9 | 7 | MLT1A (2) | AluJb (2) | MamGypLTR1b (1) | |
| 8 | 165374 | chr6 | NT_167247.1 | 1561475-1726849 | 2 | 2 | L1MC3 (1) | A-rich (1) | ||
| 9 | 163140 | chr6 | NT_167248.1 | 519530-682670 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 156850 | chr6 | NT_167244.1 | 2007747-2164597 | 5 | 4 | AluSx (2) | MIRb (1) | MIR (1) | |
| 11 | 151219 | chr9 | NT_008470.19 | 21693212-21844431 | 2 | 2 | MIR3 (1) | L1M5 (1) | ||
| 12 | 144702 | chr6 | NT_167244.1 | 2893815-3038517 | 9 | 7 | L1MC5 (2) | AluJo (2) | (TCC)n (1) | |
| 13 | 118988 | chr6 | NT_167245.1 | 2606156-2725144 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 14 | 116813 | chr6 | NT_167247.1 | 1176804-1293617 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 15 | 115876 | chr6 | NT_167246.1 | 3259828-3375704 | 4 | 3 | MIRb (2) | MIR3 (1) | AluSx (1) | |
| 16 | 112427 | chr6 | NT_167245.1 | 135649-248076 | 10 | 9 | L2c (2) | (TTTC)n (1) | MLT1F (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 176718 | chr6 | NT_167244.1 | 3179754-3356472 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 174690 | chr6 | NT_167247.1 | 4421540-4596230 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 165374 | chr6 | NT_167247.1 | 1561475-1726849 | LOC100421582 | tripartite_motif-containing_protein_26 |