| Enzyme: | Kpn2I | Longest uncut segments |
| Specificity: | TCCGGA | Repeats in uncut segments |
| Number of sites: | 94538 | Genes in uncut segments |
| Mean distance between sites: | 30266 base pairs | |
| Standard deviation: | 37714 base pairs | |
| Site density | 33.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 501692 | chr11 | NT_167190.1 | 24494515-24996207 | 51.17 % in | 1012 repeats | 0.00 % in | 0 genes |
| 2 | 500482 | chr1 | NT_032977.9 | 42838043-43338525 | 53.23 % in | 761 repeats | 0.00 % in | 0 genes |
| 3 | 498858 | chr15 | NT_037852.6 | 1392653-1891511 | 1.35 % in | 25 repeats | 0.00 % in | 0 genes |
| 4 | 468985 | chr4 | NT_016354.19 | 75828280-76297265 | 47.28 % in | 836 repeats | 100.00 % in | 1 genes |
| 5 | 453984 | chrX | NT_011651.17 | 31272241-31726225 | 82.00 % in | 596 repeats | 0.81 % in | 1 genes |
| 6 | 440260 | chr4 | NT_016354.19 | 16827573-17267833 | 60.62 % in | 624 repeats | 55.31 % in | 1 genes |
| 7 | 435976 | chr6 | NT_167244.1 | 2337021-2772997 | 3.98 % in | 76 repeats | 1.23 % in | 1 genes |
| 8 | 432501 | chr2 | NT_022171.15 | 2377082-2809583 | 46.61 % in | 648 repeats | 47.15 % in | 9 genes |
| 9 | 425762 | chrX | NT_011786.16 | 158796-584558 | 73.69 % in | 592 repeats | 0.00 % in | 0 genes |
| 10 | 414935 | chrX | NT_011651.17 | 3361922-3776857 | 78.58 % in | 585 repeats | 0.00 % in | 0 genes |
| 11 | 410516 | chr6 | NT_007299.13 | 1-410517 | 71.02 % in | 307 repeats | 0.00 % in | 0 genes |
| 12 | 407908 | chr22 | NT_011520.12 | 8131962-8539870 | 60.53 % in | 910 repeats | 0.00 % in | 0 genes |
| 13 | 405991 | chr2 | NT_005403.17 | 32326174-32732165 | 39.31 % in | 560 repeats | 0.00 % in | 0 genes |
| 14 | 395793 | chr14 | NT_026437.12 | 24121925-24517718 | 58.47 % in | 643 repeats | 0.00 % in | 0 genes |
| 15 | 385089 | chr8 | NT_008046.16 | 27752203-28137292 | 57.22 % in | 564 repeats | 0.00 % in | 0 genes |
| 16 | 382081 | chr6 | NT_007592.15 | 18714486-19096567 | 54.83 % in | 629 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 501692 | chr11 | NT_167190.1 | 24494515-24996207 | 1012 | 223 | MIRb (157) | MIR (70) | L2c (67) | |
| 2 | 500482 | chr1 | NT_032977.9 | 42838043-43338525 | 761 | 225 | AT_rich (78) | MIRb (41) | L2a (35) | |
| 3 | 498858 | chr15 | NT_037852.6 | 1392653-1891511 | 25 | 20 | L2a (3) | L1MDa (3) | L1M5 (2) | |
| 4 | 468985 | chr4 | NT_016354.19 | 75828280-76297265 | 836 | 187 | AT_rich (81) | AluSx (45) | AluJo (43) | |
| 5 | 453984 | chrX | NT_011651.17 | 31272241-31726225 | 596 | 202 | AT_rich (20) | L1MA3 (16) | L1MEg (15) | |
| 6 | 440260 | chr4 | NT_016354.19 | 16827573-17267833 | 624 | 191 | AT_rich (65) | MIR (29) | L2a (18) | |
| 7 | 435976 | chr6 | NT_167244.1 | 2337021-2772997 | 76 | 42 | AluSx (6) | AluJo (5) | AluJb (5) | |
| 8 | 432501 | chr2 | NT_022171.15 | 2377082-2809583 | 648 | 152 | L1PA12 (69) | AT_rich (51) | MER5A1 (25) | |
| 9 | 425762 | chrX | NT_011786.16 | 158796-584558 | 592 | 186 | AT_rich (28) | MIRb (17) | MIR (16) | |
| 10 | 414935 | chrX | NT_011651.17 | 3361922-3776857 | 585 | 167 | AT_rich (40) | AluSx (19) | L1MB8 (15) | |
| 11 | 410516 | chr6 | NT_007299.13 | 1-410517 | 307 | 126 | ALR/Alpha (25) | AT_rich (19) | L1PA3 (9) | |
| 12 | 407908 | chr22 | NT_011520.12 | 8131962-8539870 | 910 | 198 | AluSx (78) | AluJb (53) | AT_rich (51) | |
| 13 | 405991 | chr2 | NT_005403.17 | 32326174-32732165 | 560 | 168 | AT_rich (45) | MIR (35) | L2a (26) | |
| 14 | 395793 | chr14 | NT_026437.12 | 24121925-24517718 | 643 | 212 | AT_rich (81) | (TA)n (21) | AluSx (16) | |
| 15 | 385089 | chr8 | NT_008046.16 | 27752203-28137292 | 564 | 194 | AT_rich (70) | L2a (22) | MIRb (12) | |
| 16 | 382081 | chr6 | NT_007592.15 | 18714486-19096567 | 629 | 204 | AT_rich (25) | L2a (23) | MIRb (19) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 468985 | chr4 | NT_016354.19 | 75828280-76297265 | LOC729566 | protein_archease-like |
| 5 | 453984 | chrX | NT_011651.17 | 31272241-31726225 | IRS4 | insulin_receptor_substrate_4 |
| 6 | 440260 | chr4 | NT_016354.19 | 16827573-17267833 | TMSL3 | thymosin_beta-4-like_protein_3 |
| 7 | 435976 | chr6 | NT_167244.1 | 2337021-2772997 | HCG22 | HLA_complex_group_22 |
| 8 | 432501 | chr2 | NT_022171.15 | 2377082-2809583 | LOC653924 | |
| FAHD2B | fumarylacetoacetate_hydrolase_domain-containing_protein_2B | |||||
| ANKRD36 | ankyrin_repeat_domain-containing_protein_36A | |||||
| LOC100506076 | hypothetical_LOC100506076,_transcript_variant_1 | |||||
| IGKV2OR2-10 | ||||||
| IGKV2OR2-7 | ||||||
| UBE3AP1 | ||||||
| LOC100506123 | hypothetical_LOC100506123,_transcript_variant_2 | |||||
| ANKRD36B | ankyrin_repeat_domain-containing_protein_36B | |||||