| Enzyme: | BstAPI | Longest uncut segments |
| Specificity: | GCANNNNNTGC | Repeats in uncut segments |
| Number of sites: | 814879 | Genes in uncut segments |
| Mean distance between sites: | 3511 base pairs | |
| Standard deviation: | 3769 base pairs | |
| Site density | 284.8 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 516174 | chr15 | NT_037852.6 | 1396184-1912358 | 1.95 % in | 46 repeats | 1.93 % in | 1 genes |
| 2 | 403729 | chr6 | NT_167244.1 | 2359236-2762965 | 0.17 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 247146 | chr6 | NT_167244.1 | 2009148-2256294 | 1.28 % in | 13 repeats | 1.87 % in | 2 genes |
| 4 | 218105 | chr6 | NT_167244.1 | 4382048-4600153 | 2.43 % in | 18 repeats | 0.73 % in | 1 genes |
| 5 | 183105 | chr6 | NT_167244.1 | 3789602-3972707 | 1.05 % in | 11 repeats | 0.00 % in | 0 genes |
| 6 | 182437 | chr6 | NT_167247.1 | 4413051-4595488 | 2.13 % in | 13 repeats | 97.77 % in | 1 genes |
| 7 | 181184 | chr6 | NT_167247.1 | 1553348-1734532 | 5.27 % in | 45 repeats | 5.30 % in | 1 genes |
| 8 | 176757 | chr6 | NT_167244.1 | 3179873-3356630 | 0.28 % in | 6 repeats | 0.45 % in | 2 genes |
| 9 | 171655 | chr6 | NT_167249.1 | 2132076-2303731 | 2.82 % in | 23 repeats | 0.00 % in | 0 genes |
| 10 | 163758 | chr6 | NT_167248.1 | 520112-683870 | 2.72 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 156770 | chr9 | NT_008470.19 | 21688300-21845070 | 2.80 % in | 13 repeats | 0.00 % in | 0 genes |
| 12 | 145985 | chr6 | NT_167244.1 | 2893764-3039749 | 1.79 % in | 16 repeats | 0.00 % in | 0 genes |
| 13 | 125667 | chr6 | NT_167246.1 | 3255055-3380722 | 2.47 % in | 18 repeats | 0.00 % in | 0 genes |
| 14 | 125053 | chr14 | NT_026437.12 | 196969-322022 | 99.29 % in | 10 repeats | 0.00 % in | 0 genes |
| 15 | 124298 | chr6 | NT_167245.1 | 2603151-2727449 | 4.25 % in | 15 repeats | 0.00 % in | 0 genes |
| 16 | 121364 | chrY | NT_011875.12 | 8500739-8622103 | 58.75 % in | 5 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 516174 | chr15 | NT_037852.6 | 1396184-1912358 | 46 | 29 | AT_rich (5) | L2a (4) | (TA)n (3) | |
| 2 | 403729 | chr6 | NT_167244.1 | 2359236-2762965 | 3 | 3 | L4 (1) | L1MEg (1) | AluSp (1) | |
| 3 | 247146 | chr6 | NT_167244.1 | 2009148-2256294 | 13 | 12 | MIRb (2) | MIR (1) | MER5A1 (1) | |
| 4 | 218105 | chr6 | NT_167244.1 | 4382048-4600153 | 18 | 13 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 5 | 183105 | chr6 | NT_167244.1 | 3789602-3972707 | 11 | 10 | MLT1H-int (2) | (TA)n (1) | MLT1H (1) | |
| 6 | 182437 | chr6 | NT_167247.1 | 4413051-4595488 | 13 | 11 | L2b (3) | MIRc (1) | MIRb (1) | |
| 7 | 181184 | chr6 | NT_167247.1 | 1553348-1734532 | 45 | 34 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 8 | 176757 | chr6 | NT_167244.1 | 3179873-3356630 | 6 | 5 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 9 | 171655 | chr6 | NT_167249.1 | 2132076-2303731 | 23 | 13 | AluSx (4) | AluJo (3) | MLT2B1 (2) | |
| 10 | 163758 | chr6 | NT_167248.1 | 520112-683870 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 156770 | chr9 | NT_008470.19 | 21688300-21845070 | 13 | 10 | LTR67B (2) | L2 (2) | L1M4b (2) | |
| 12 | 145985 | chr6 | NT_167244.1 | 2893764-3039749 | 16 | 8 | L1MC5 (5) | AluSc (3) | AluY (2) | |
| 13 | 125667 | chr6 | NT_167246.1 | 3255055-3380722 | 18 | 12 | AluSx (4) | L1MC5 (3) | MIRb (2) | |
| 14 | 125053 | chr14 | NT_026437.12 | 196969-322022 | 10 | 7 | CER (4) | MER94 (1) | L1PA4 (1) | |
| 15 | 124298 | chr6 | NT_167245.1 | 2603151-2727449 | 15 | 12 | Tigger1 (2) | MLT1N2 (2) | L2 (2) | |
| 16 | 121364 | chrY | NT_011875.12 | 8500739-8622103 | 5 | 2 | LTR12B (4) | LTR12D (1) | ||
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 516174 | chr15 | NT_037852.6 | 1396184-1912358 | LOC100418897 | |
| 3 | 247146 | chr6 | NT_167244.1 | 2009148-2256294 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 218105 | chr6 | NT_167244.1 | 4382048-4600153 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 6 | 182437 | chr6 | NT_167247.1 | 4413051-4595488 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 181184 | chr6 | NT_167247.1 | 1553348-1734532 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 8 | 176757 | chr6 | NT_167244.1 | 3179873-3356630 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||