| Enzyme: | BsiEI | Longest uncut segments |
| Specificity: | CGRYCG | Repeats in uncut segments |
| Number of sites: | 134912 | Genes in uncut segments |
| Mean distance between sites: | 21208 base pairs | |
| Standard deviation: | 41607 base pairs | |
| Site density | 47.1 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 1263361 | chrX | NT_011651.17 | 4000073-5263434 | 81.69 % in | 1846 repeats | 0.13 % in | 2 genes |
| 2 | 893871 | chrY | NT_011875.12 | 7905471-8799342 | 79.18 % in | 823 repeats | 8.40 % in | 7 genes |
| 3 | 810606 | chr6 | NT_007299.13 | 6552652-7363258 | 59.25 % in | 1261 repeats | 9.54 % in | 1 genes |
| 4 | 767861 | chr1 | NT_032977.9 | 74687079-75454940 | 62.71 % in | 1166 repeats | 0.00 % in | 0 genes |
| 5 | 637955 | chr1 | NT_004487.19 | 47606000-48243955 | 48.85 % in | 995 repeats | 76.74 % in | 3 genes |
| 6 | 636026 | chr10 | NT_030059.13 | 60015393-60651419 | 51.53 % in | 1047 repeats | 0.24 % in | 1 genes |
| 7 | 634772 | chr4 | NT_016354.19 | 58848761-59483533 | 54.12 % in | 888 repeats | 0.00 % in | 0 genes |
| 8 | 600898 | chr15 | NT_037852.6 | 1303171-1904069 | 10.36 % in | 267 repeats | 2.83 % in | 2 genes |
| 9 | 594402 | chr6 | NT_007299.13 | 19352857-19947259 | 57.89 % in | 853 repeats | 0.00 % in | 0 genes |
| 10 | 584965 | chr10 | NT_030059.13 | 9171461-9756426 | 57.01 % in | 922 repeats | 0.00 % in | 0 genes |
| 11 | 582231 | chr14 | NT_026437.12 | 23985226-24567457 | 56.88 % in | 917 repeats | 0.00 % in | 0 genes |
| 12 | 574053 | chr5 | NT_034772.6 | 28559276-29133329 | 52.95 % in | 879 repeats | 0.00 % in | 0 genes |
| 13 | 570097 | chr8 | NT_008046.16 | 17787410-18357507 | 61.00 % in | 885 repeats | 0.00 % in | 0 genes |
| 14 | 568426 | chr3 | NT_022517.18 | 34093988-34662414 | 56.25 % in | 919 repeats | 0.00 % in | 0 genes |
| 15 | 568241 | chr5 | NT_006576.16 | 42069152-42637393 | 52.99 % in | 802 repeats | 0.00 % in | 0 genes |
| 16 | 564792 | chr2 | NT_022135.16 | 13464111-14028903 | 59.46 % in | 943 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 1263361 | chrX | NT_011651.17 | 4000073-5263434 | 1846 | 339 | AT_rich (100) | (TA)n (44) | AluSx (43) | |
| 2 | 893871 | chrY | NT_011875.12 | 7905471-8799342 | 823 | 221 | AT_rich (58) | AluY (33) | L1M1 (20) | |
| 3 | 810606 | chr6 | NT_007299.13 | 6552652-7363258 | 1261 | 299 | AT_rich (152) | MIRb (33) | (TA)n (30) | |
| 4 | 767861 | chr1 | NT_032977.9 | 74687079-75454940 | 1166 | 277 | AT_rich (161) | L2a (32) | (TA)n (30) | |
| 5 | 637955 | chr1 | NT_004487.19 | 47606000-48243955 | 995 | 264 | AT_rich (122) | L2a (33) | MIRb (28) | |
| 6 | 636026 | chr10 | NT_030059.13 | 60015393-60651419 | 1047 | 261 | AT_rich (62) | MIRb (60) | MIR (45) | |
| 7 | 634772 | chr4 | NT_016354.19 | 58848761-59483533 | 888 | 256 | AT_rich (123) | L2a (29) | MIRb (19) | |
| 8 | 600898 | chr15 | NT_037852.6 | 1303171-1904069 | 267 | 96 | AluSx (17) | AT_rich (12) | (GCTG)n (11) | |
| 9 | 594402 | chr6 | NT_007299.13 | 19352857-19947259 | 853 | 240 | AT_rich (85) | MIRb (43) | MIR (25) | |
| 10 | 584965 | chr10 | NT_030059.13 | 9171461-9756426 | 922 | 278 | AT_rich (82) | MIR (37) | MIRb (31) | |
| 11 | 582231 | chr14 | NT_026437.12 | 23985226-24567457 | 917 | 263 | AT_rich (115) | (TA)n (28) | AluSx (24) | |
| 12 | 574053 | chr5 | NT_034772.6 | 28559276-29133329 | 879 | 245 | AT_rich (98) | MIRb (21) | L2a (21) | |
| 13 | 570097 | chr8 | NT_008046.16 | 17787410-18357507 | 885 | 224 | AT_rich (91) | AluSx (34) | L2c (26) | |
| 14 | 568426 | chr3 | NT_022517.18 | 34093988-34662414 | 919 | 249 | MIRb (55) | AT_rich (43) | MIR (35) | |
| 15 | 568241 | chr5 | NT_006576.16 | 42069152-42637393 | 802 | 234 | AT_rich (48) | MIRb (30) | MIR (30) | |
| 16 | 564792 | chr2 | NT_022135.16 | 13464111-14028903 | 943 | 251 | AT_rich (76) | MIRb (31) | MIR (31) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 1263361 | chrX | NT_011651.17 | 4000073-5263434 | LOC100129843 | |
| RPL22P22 | ||||||
| 2 | 893871 | chrY | NT_011875.12 | 7905471-8799342 | CYorf15A | hypothetical_protein_LOC246126 |
| CYorf15B | lipopolysaccaride-specific_response_5-like_protein | |||||
| KDM5D | lysine-specific_demethylase_5D_isoform_3 | |||||
| RCC2P2 | ||||||
| ZNF886P | ||||||
| ZNF884P | ||||||
| ZNF885P | ||||||
| 3 | 810606 | chr6 | NT_007299.13 | 6552652-7363258 | LOC100128293 | hypothetical_LOC100507123 |
| 5 | 637955 | chr1 | NT_004487.19 | 47606000-48243955 | KCNT2 | potassium_channel_subfamily_T_member_2 |
| CFH | complement_factor_H_isoform_b_precursor | |||||
| CFHR3 | complement_factor_H-related_protein_3_isoform_2_precursor | |||||
| 6 | 636026 | chr10 | NT_030059.13 | 60015393-60651419 | LOC100128304 | hypothetical_protein_LOC100128304 |
| 8 | 600898 | chr15 | NT_037852.6 | 1303171-1904069 | LOC727914 | |
| LOC100418897 | ||||||