NEBeta | Genomes and Restriction Enzyme Frequencies

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Genomes and Restriction Enzyme Frequencies

Human cDNA digests with TypeII restriction enzymes, ordered by average fragment lengths (May 2017)
Fragment distributions of the oyster genome following theoretical digests with TypeII restriction enzyme pairs,
ordered by average fragment lengths (2017)
Drosophila melanogaster theoretical digest and site densities employing TypeII restriction enzymes (2017)
K-12 single and double digests with TypeII restriction enzymes (2017)
Mouse genome restriction enzyme site frequencies (2016)
Restriction enzyme site frequencies in fish genomes (2016)
Coordinates and genomic neighborhoods of restriction enzyme sites in the human genome hg19
        BamHI (360,000 sites, 16 Mbyte file)
        EcoRI (840,000 sites, 39 Mbyte)
(large files, dowload them with "Save as..")    (August 3, 2016.)
BED files with restriction enzyme site coordinates in the human chromosomes (October 28, 2015)
Fragment length distributions after DOUBLE digests of the human genome (September 23, 2015)
Fragment length distributions after SINGLE ENZYME digests of the human genome (September 18, 2015)
GRCh38 genome assembly analyzed, lists ordered on cut frequences.
Average restriction fragment lengths in protozoa (2013)
AsiSI (GCGATCGC) restriction enzyme sites in the human genome (2015)
Coordinates map to assembly GRCh38. BED file format.
Restriction enzyme site distributions in the human genome (2010, 2011)
Short fragments after a BstBI (TTCGAA) digest of the human genome (2016)
Count of fragments with same size here

(some files are large, use "save as ..")
BamHI digest short fragments (100-200 bp), and counts of framents with same exact size (June 1, 2016)
BsrI digest short fragments (100-200 bp), and counts of framents with same exact size (June 1, 2016)
EcoRI digest short fragments (100-200 bp), and counts of framents with same exact size (June 1, 2016)
NcoI digest short fragments (100-200 bp), and counts of framents with same exact size (June 1, 2016)

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