# site counts in mouse genome # GCA_000001635.7_GRCm38.p5_genomic.fna assembly (6/30/2016) # 2728.358 Mbp of sequence in 207 scaffolds, not counting 79,357,031 spacefilling Ns # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 145104 53.18 18802 Acc65I GGTACC 665030 243.75 4102 AccI GTMKAC 2760649 1011.84 988 AciI CCGC 5275987 1933.76 517 AclI AACGTT 278700 102.15 9789 AcuI CTGAAG 5004671 1834.32 545 AfeI AGCGCT 231028 84.68 11809 AflII CTTAAG 1236368 453.15 2206 AflIII ACRYGT 2886836 1058.09 945 AgeI ACCGGT 131440 48.18 20757 AluI AGCT 25956419 9513.57 105 AlwI GGATC 7515413 2754.56 363 ApaI GGGCCC 751492 275.44 3630 ApaLI GTGCAC 1049052 384.50 2600 ApeKI GCWGC 9550337 3500.40 285 ApoI RAATTY 10199886 3738.47 267 AscI GGCGCGCC 2735 1.00 997571 AseI ATTAAT 2308066 845.95 1182 AsiSI GCGATCGC 1147 0.42 2378690 AvaI CYCGRG 1383026 506.91 1972 AvaII GGWCC 6900452 2529.16 395 AvrII CCTAGG 1204274 441.39 2265 BaeGI GKGCMC 3605907 1321.64 756 BamHI GGATCC 1129614 414.03 2415 BanI GGYRCC 2361138 865.41 1155 BanII GRGCYC 4183387 1533.30 652 BbvI GCAGC 9550337 3500.40 285 BccI CCATC 12656469 4638.86 215 BceAI ACGGC 1234905 452.62 2209 BciVI GTATCC 1716572 629.16 1589 BclI TGATCA 1405413 515.11 1941 BcoDI GTCTC 11910476 4365.44 229 BfuAI ACCTGC 2508765 919.51 1087 BfuCI GATC 13754181 5041.19 198 BglII AGATCT 1956209 716.99 1394 BlpI GCTNAGC 1339572 490.98 2036 BmrI ACTGGG 3318954 1216.47 822 BmtI GCTAGC 732435 268.45 3725 BpmI CTGGAG 4969327 1821.36 549 BpuEI CTTGAG 3410611 1250.06 799 BsaAI YACGTR 1226467 449.53 2224 BsaHI GRCGYC 582783 213.60 4681 BsaI GGTCTC 2331498 854.54 1170 BsaWI WCCGGW 734490 269.21 3714 BseRI GAGGAG 5618995 2059.48 485 BsgI GTGCAG 2688608 985.43 1014 BsiEI CGRYCG 195330 71.59 13967 BsiHKAI GWGCWC 4844604 1775.65 563 BsiWI CGTACG 29624 10.86 92099 BsmAI GTCTC 11910476 4365.44 229 BsmBI CGTCTC 503640 184.59 5417 BsmFI GGGAC 7936774 2908.99 343 BsmI GAATGC 2284351 837.26 1194 BsoBI CYCGRG 1383026 506.91 1972 Bsp1286I GDGCHC 9461058 3467.67 288 BspCNI CTCAG 18605393 6819.26 146 BspDI ATCGAT 238745 87.51 11427 BspEI TCCGGA 210486 77.15 12962 BspHI TCATGA 1826804 669.56 1493 BspMI ACCTGC 2508765 919.51 1087 BspQI GCTCTTC 996239 365.14 2738 BsrBI CCGCTC 408419 149.69 6680 BsrFI RCCGGY 577793 211.77 4722 BsrGI TGTACA 1799443 659.53 1516 BsrI ACTGG 12158814 4456.46 224 BssHII GCGCGC 145943 53.49 18694 BssSI CACGAG 580210 212.66 4702 BstBI TTCGAA 206300 75.61 13225 BstEII GGTNACC 795317 291.50 3430 BstNI CCWGG 16316508 5980.34 167 BstUI CGCG 889311 325.95 3067 BstYI RGATCY 5864071 2149.30 465 BstZ17I GTATAC 775263 284.15 3519 Bsu36I CCTNAGG 1571707 576.06 1735 BtgI CCRYGG 2516499 922.35 1084 BtgZI GCGATG 314430 115.25 8677 BtsCI GGATG 11632111 4263.41 234 ClaI ATCGAT 238745 87.51 11427 CviAII CATG 26346369 9656.49 103 CviKI-1 RGCY 80553229 29524.43 33 CviQI GTAC 11586426 4246.67 235 DdeI CTNAG 28937697 10606.27 94 DpnII GATC 13754181 5041.19 198 DraI TTTAAA 5203498 1907.19 524 EaeI YGGCCR 2306727 845.46 1182 EagI CGGCCG 83710 30.68 32592 EarI CTCTTC 5584774 2046.94 488 EciI GGCGGA 426914 156.47 6390 Eco53kI GAGCTC 1372296 502.97 1988 EcoO109I RGGNCCY 5082543 1862.86 536 EcoRI GAATTC 1580630 579.33 1726 EcoRV GATATC 927824 340.07 2940 FatI CATG 26346369 9656.49 103 FauI CCCGC 1675614 614.15 1628 Fnu4HI GCNGC 10705018 3923.61 254 FokI GGATG 11632111 4263.41 234 FseI GGCCGGCC 10537 3.86 258931 FspI TGCGCA 230062 84.32 11859 HaeII RGCGCY 795238 291.47 3430 HaeIII GGCC 14253309 5224.13 191 HgaI GACGC 985550 361.22 2768 HhaI GCGC 2290377 839.47 1191 HincII GTYRAC 2250488 824.85 1212 HindIII AAGCTT 1747202 640.39 1561 HinfI GANTC 16351038 5993.00 166 HinP1I GCGC 2290377 839.47 1191 HpaI GTTAAC 687956 252.15 3965 HpaII CCGG 3385275 1240.77 805 HphI GGTGA 9495353 3480.24 287 Hpy188I TCNGA 19359448 7095.64 140 Hpy99I CGWCG 248349 91.03 10985 HpyAV CCTTC 15639196 5732.09 174 HpyCH4III ACNGT 15117433 5540.85 180 HpyCH4IV ACGT 3716804 1362.29 734 HpyCH4V TGCA 24567277 9004.42 111 KasI GGCGCC 162152 59.43 16825 KpnI GGTACC 665030 243.75 4102 MboI GATC 13754181 5041.19 198 MboII GAAGA 20258844 7425.29 134 MfeI CAATTG 1068036 391.46 2554 MluCI AATT 33169609 12157.35 82 MluI ACGCGT 50699 18.58 53814 MlyI GAGTC 8084036 2962.97 337 MmeI TCCRAC 2699120 989.28 1010 MnlI CCTC 50058081 18347.33 54 MscI TGGCCA 1642665 602.07 1660 MseI TTAA 31668553 11607.18 86 MspA1I CMGCKG 2783288 1020.13 980 MspI CCGG 3385275 1240.77 805 NaeI GCCGGC 182894 67.03 14917 NarI GGCGCC 162152 59.43 16825 NciI CCSGG 2282437 836.56 1195 NcoI CCATGG 1780128 652.45 1532 NdeI CATATG 1866159 683.99 1462 NgoMIV GCCGGC 182894 67.03 14917 NheI GCTAGC 732435 268.45 3725 NlaIII CATG 26346369 9656.49 103 NmeAIII GCCGAG 484814 177.69 5627 NotI GCGGCCGC 6553 2.40 416352 NruI TCGCGA 21678 7.95 125858 NsiI ATGCAT 1962044 719.13 1390 NspI RCATGY 6613829 2424.11 412 PacI TTAATTAA 147512 54.07 18495 PaeR7I CTCGAG 267214 97.94 10210 PciI ACATGT 2098351 769.09 1300 PleI GAGTC 8084036 2962.97 337 PluTI GGCGCC 162152 59.43 16825 PmeI GTTTAAAC 36017 13.20 75751 PmlI CACGTG 554350 203.18 4921 PpuMI RGGWCCY 2914536 1068.24 936 PsiI TTATAA 2540206 931.04 1074 PspGI CCWGG 16316508 5980.34 167 PspOMI GGGCCC 751492 275.44 3630 PspXI VCTCGAGB 73718 27.02 37010 PstI CTGCAG 2106297 772.00 1295 PvuI CGATCG 23820 8.73 114540 PvuII CAGCTG 2137894 783.58 1276 RsaI GTAC 11586426 4246.67 235 RsrII CGGWCCG 26796 9.82 101819 SacI GAGCTC 1372296 502.97 1988 SacII CCGCGG 84492 30.97 32291 SalI GTCGAC 71830 26.33 37983 SapI GCTCTTC 996239 365.14 2738 Sau3AI GATC 13754181 5041.19 198 Sau96I GGNCC 13501116 4948.44 202 SbfI CCTGCAGG 63032 23.10 43285 ScaI AGTACT 1362906 499.53 2001 ScrFI CCNGG 18598945 6816.90 146 SexAI ACCWGGT 624852 229.02 4366 SfaNI GCATC 8429172 3089.47 323 SfcI CTRYAG 6864703 2516.06 397 SfoI GGCGCC 162152 59.43 16825 SgrAI CRCCGGYG 14492 5.31 188266 SmaI CCCGGG 370574 135.82 7362 SmlI CTYRAG 4914193 1801.15 555 SnaBI TACGTA 195321 71.59 13968 SpeI ACTAGT 738898 270.82 3692 SphI GCATGC 1242685 455.47 2195 SrfI GCCCGGGC 11073 4.06 246397 SspI AATATT 3335016 1222.35 818 StuI AGGCCT 1461460 535.66 1866 StyD4I CCNGG 18598945 6816.90 146 StyI CCWWGG 6507587 2385.17 419 SwaI ATTTAAAT 165119 60.52 16523 TaqI TCGA 2983778 1093.62 914 TfiI GAWTC 8267002 3030.03 330 TseI GCWGC 9550337 3500.40 285 Tsp45I GTSAC 8358366 3063.51 326 TspMI CCCGGG 370574 135.82 7362 TspRI CASTG 15342302 5623.27 177 XbaI TCTAGA 1705910 625.25 1599 XhoI CTCGAG 267214 97.94 10210 XmaI CCCGGG 370574 135.82 7362 ZraI GACGTC 145104 53.18 18802