Wolbachia Genome Project

Sequencing the Brugia malayi endosymbiont


Home home page Overview general information References recent literature references Search Blast sequence files Probes View probe sequences Links Wolbachia genome and related resources		POLICY ON ACCESS TO THE DNA SEQUENCE DATA: The data is provided "as is," and New England Biolabs, Inc. and/or Integrated Genomics (IG) makes no representation or warranty about the data or its use. For futher information or other data requests, please contact: Dr. Barton E. Slatko (New England Biolabs): +1-978-5054 ext. 327; dnaseq@neb.com Downloadable Files Complete genome sequence (NC_006833): Download in Genbank format Download in FASTA format. ORFs (based on RefSeq NC_006833): Download DNA sequences in FASTA format Download peptide sequencs in FASTA format Annotated sequence comparison of Wolbachia from Brugia malayi against Wolbachia from Drosophila melanogaster: Download in Excel Format. Links Foster J, Ganatra M, Kamal I, Ware J, Makarova K, et al. (2005) The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode. PLoS Biol 3(4): e121. NCBI Genomes view of the Wolbachia endosymbiont strain TRS of Brugia malayi. Query the Wolbachia sequence using NCBI BLAST Choose program to use and database to search: Program Database Use MegaBlast Enter sequence below in raw or FASTA format (max ~ 10Kb) characters left The query sequence is filtered for low complexity regions by default. Filter Low complexity Mask for lookup table only Expect Matrix Perform ungapped alignment Query Genetic Codes (blastx only) Frame shift penalty for blastx For megablast blastn searches: Word Size Percent Identity Other advanced options: Graphical Overview Alignment view Descriptions Alignments Color schema

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