Escherichia coli O157:H7 EDL933 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O157:H7 EDL933 RM systems
Ref: Perna,N.T. et al. Nature 409 (6819), 529-533 (2001)
REBASE ref # 6635
| Sequence length: | GenBank #: | |
| Chromosome: | 5,528,445 bp | AE005174 (NC_002655) |
| plasmid pO157: | 92,077 bp | AF074613 (NC_007414) |
REBASE acronym: EcoO157
Org_num: 1263
All begin Z, Z_L
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5945 | orf; hypothetical protein | |||
| 5946 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoO157ORF5947P |
| 5947 | M | M.EcoX21ORF4993P (100% identity) | CACNNNNNNNCTGG | M.EcoO157ORF5947P |
| 5948 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoO157ORF5947P |
| 5949 | orf; conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2059 | 106 aa unknown protein encoded by prophage CP-933O | |||
| 2060 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoO157ORF2060P | |
| 2063 | 116 aa unknown protein encoded by prophage CP-933O | |||
| 2387 | 330 aa unknown protein encoded within prophage CP-933R | |||
| 2389 | M | M.Ecos15739ORF2910P (100% identity) | M.EcoO157I | |
| 2390 | 85 aa unknown protein encoded within prophage CP-933R | |||
| 3050 | transmembrane subunit | |||
| 3053 | V | V.EcosPA8DcmP (100% identity) | V.EcoO157DcmP | |
| 3054 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoO157DcmP |
| 3055 | orf, hypothetical protein | |||
| 4621 | site-specific DNA inversion stimulation factor; | |||
| 4622 | M | M.Eco8714ORFAP (100% identity) | ATGCAT | M.EcoO157ORF4622P |
| 4623 | orf, hypothetical protein | |||
| 4739 | D-ribulose-5-phosphate 3-epimerase | |||
| 4740 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoO157DamP |
| 4741 | membrane protein; interferes with cell | |||
| 5899 | ATP-dependent helicase | |||
| 5900 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoO157ORF5900P |
| plasmid pO157 | ||||
| 7073 | 300 aa unknown | |||
| 7074 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoO157ORF7074P | |
| 7075 | 184 aa unknown | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5942 | orf, hypothetical protein | |||
| 5943 | R | Ecos1613GmrSP (100% identity) | EcoO157GmrSP | |
| 5944 | R | EcosPA8GmrSDP (55% identity) | EcoO157GmrDP | |
| 5945 | orf; hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1453 | 148 aa unknown protein encoded by bacteriophage | |||
| 1454 | M | M.SflN97ORF8425P (100% identity) | GATC | M.EcoO157ORF1454P |
| 1456 | 347 aa unknown protein encoded by bacteriophage | |||
| 3348 | 143 aa unknown protein encoded within prophage CP-933V | |||
| 3349 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoO157ORF3349P |
| 3351 | 148 aa unknown protein encoded within prophage CP-933V | |||