Methylocystis species |
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Putative Methylocystis species RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 12725
Contig set: 4,625,807 bp
GenBank #: AEVM00000000 (NZ_AEVM00000000)
REBASE acronym: Msp49242
Org_num: 6964
All begin Met49242DRAFT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 629 | 86 aa hypothetical protein | |||
| 630 | R | MspXJLMORF24295P (46% identity) | Msp49242ORF631P | |
| 631 | M | M.LspC1B70ORF7740P (69% identity) | M.Msp49242ORF631P | |
| 632 | S | S.Rrh29514ORFCP (42% identity) | S.Msp49242ORF631P | |
| 633 | Protein of unknown function DUF2081 | |||
| 3958 | 872 aa hypothetical protein | |||
| 3959 | M | M.NpaP5ORFCP (77% identity) | M.Msp49242ORF3959P | |
| 3960 | R | NwiORF269P (93% identity) | Msp49242ORF3959P | |
| 3961 | DNA binding domain protein, excisionase family | |||
| 4461 | SlyX family protein | |||
| 4462 | M | 142 aa hypothetical protein | M.Msp49242ORF4462P | |
| 4463 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 783 | plasmid maintenance system antidote protein, XRE | |||
| 784 | M | M.MspJR02ORF5280P (77% identity) | GTAC | M.Msp49242ORF784P |
| 785 | 171 aa hypothetical protein | |||
| 1393 | GTP-binding protein TypA | |||
| ??? | RM | MspJR02ORF1445P (71% identity) | Msp49242ORF1394P | |
| 1396 | pseudouridine synthase, RluA family | |||
| 2622 | 101 aa hypothetical protein | |||
| 2623 | M | M.MroSV97ORFEP (76% identity) | GGCGCC | M.Msp49242ORF2623P |
| 2624 | V | V.MspLW5ORFAP (77% identity) | V.Msp49242ORF2623P | |
| 2625 | translation elongation factor P | |||
| 3198 | PglZ domain protein | |||
| 3199 | RM | SquP25ORF20725P (73% identity) | Msp49242ORF3199P | |
| 3200 | 166 aa hypothetical protein | |||
| 3576 | 199 aa hypothetical protein | |||
| 3577 | M | M.Msp49242ORFAP (84% identity) | GGCGCC | M.Msp49242ORF3577P |
| 3578 | R | R2.Msp49242ORFAP (84% identity) | GGCGCC | Msp49242ORF3577P |
| 3579 | 95 aa hypothetical protein | |||
| 3713 | 73 aa hypothetical protein | |||
| 3714 | M | DNA methylase N-4/N-6 | TCTAGA | M.Msp49242ORF3714P |
| 3715 | copper resistance D domain-containing protein | |||
| 4008 | monocyte to macrophage | |||
| 4009 | R | R1.MroGW6ORF19695P (80% identity) | GGCGCC | R1.Msp49242ORFAP |
| 4010 | R | Msp49242ORF3577P (84% identity) | GGCGCC | R2.Msp49242ORFAP |
| 4011 | M | M.Msp49242ORF3577P (84% identity) | GGCGCC | M.Msp49242ORFAP |
| 4323 | 158 aa hypothetical protein | |||
| ??? | M | M.MspSB2ORF16925P (76% identity) | M.Msp49242ORF4324P | |
| 4326 | integrase catalytic subunit | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3043 | transposase IS4 family protein | |||
| 3044 | R | Bsps187GmrSDP (43% identity) | Msp49242GmrDP | |
| 3045 | helicase, RecD/TraA family | |||
| 1282 | Radical SAM domain protein | |||
| 1283 | R | Mbu5GMrrP (68% identity) | Msp49242Mrr2P | |
| 1284 | histidine kinase | |||
| 1677 | 113 aa hypothetical protein | |||
| 1678 | R | MpaOBBPMrrP (66% identity) | Msp49242MrrP | |
| 1679 | 229 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 434 | 72 aa hypothetical protein | |||
| 435 | M | M.MspNBRII (80% identity) | GANTC | M.Msp49242ORFBP |
| 436 | Ribonuclease H | |||