Escherichia coli |
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Putative Escherichia coli RM systems
Ref: Papagiannitsis,C.C. et al. Antimicrob. Agents Chemother. 55 (1), 376-381 (2011)
REBASE ref # 12434
| Sequence length: | GenBank #: | |
| Chromosome: | 4,910,475 bp | FUVF00000000 (NZ_FUVF00000000) |
| chromosome IV: | 4,903,991 bp | LT883142 |
| plasmid I: | 118,720 bp | LT883139 |
| plasmid II: | 89,743 bp | LT906557 |
| plasmid III: | 61,544 bp | LT906558 |
| plasmid p3521: | 110,416 bp | GU256641 |
| plasmid pM105_FII: | 84,133 bp | AP018136 |
| plasmid pM105_mF: | 93,258 bp | AP018137 |
| plasmid pM107_FII: | 87,587 bp | AP018138 |
| plasmid pM109_FII: | 90,294 bp | AP018139 |
| plasmid pM110_FII: | 81,783 bp | AP018140 |
| plasmid pM214_AC2: | 176,026 bp | AP018143 |
| plasmid pM214_FII: | 94,643 bp | AP018144 |
| plasmid pM216_AC2: | 201,138 bp | AP018145 |
| plasmid pM217_FII: | 102,071 bp | AP018147 |
REBASE acronym: Eco3521
Org_num: 6651
All begin EC1094V2_, MYEC217_p, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome IV | ||||
| 3924 | FIG00638723: hypothetical protein | |||
| 3925 | R | SspS13ORF3945P (100% identity) | Eco7727ORF3926P | |
| 3926 | M | M.SflTORF4636P (98% identity) | M.Eco7727ORF3926P | |
| 3927 | S | S.Eco2324ORF2319P (100% identity) | S.Eco7727ORF3926P | |
| 3928 | FIG00638399: hypothetical protein | |||
| plasmid I | ||||
| 4949 | 44 aa hypothetical protein | |||
| 4950 | R | EcoPO3ORF25115P (100% identity) | GAANNNNNNNTAAA | Eco7727ORF4952P |
| 4951 | S | S.Eco11130I (100% identity) | GAANNNNNNNTAAA | S.Eco7727ORF4952P |
| 4952 | M | M.Eco11130I (100% identity) | GAANNNNNNNTAAA | M.Eco7727ORF4952P |
| 4953 | Prevent host death protein, Phd antitoxin | |||
| plasmid pM105_mF | ||||
| ??? | Prevent host death protein, Phd antitoxin | |||
| ??? | M | M.KpnKPA1ORF26345P (100% identity) | M.EcoM105ORFDP | |
| ??? | Type I restriction-modification system, | |||
| ??? | Type I restriction-modification system, | |||
| ??? | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoM105ORFCP |
| ??? | R | KpnKPH1ORF27575P (99% identity) | CAAYNNNNNCTGG | EcoM105ORFCP |
| ??? | IS1 protein InsB | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5 | LexA DNA binding domain protein | |||
| 9 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoP19ORFEP |
| 12 | uncharacterized protein | |||
| 5 | YfcA protein | |||
| 7 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoP19ORFIP |
| 12 | 81 aa hypothetical protein | |||
| 12 | 70 aa hypothetical protein | |||
| 13 | M | M.EcoDEC13BORF1281P (100% identity) | M.EcoP19ORFHP | |
| 15 | 90 aa hypothetical protein | |||
| 23 | periplasmic protein | |||
| 24 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoP19ORFAP |
| 26 | 98 aa hypothetical protein | |||
| 204 | 84 aa hypothetical protein | |||
| 205 | M | M.EcosE1ORFEP (99% identity) | M.EcoP19ORFCP | |
| 209 | 73 aa hypothetical protein | |||
| 168 | Integrase | |||
| 170 | R | EcosB7ADptFP (100% identity) | EcoP19DptFP | |
| 171 | Uncharacterized protein | |||
| 170 | DNA phosphorothioation-dependent restriction protein DptF | |||
| 171 | R | EcosB7ADptGP (100% identity) | EcoP19DptGP | |
| 173 | DNA phosphorothioation-dependent restriction protein DptH | |||
| 171 | Uncharacterized protein | |||
| 173 | R | EcosB7ADptHP (100% identity) | EcoP19DptHP | |
| 174 | Uncharacterized protein | |||
| 175 | Uncharacterized protein | |||
| 176 | M | M.EcosB7ADndEP (100% identity) | M.EcoP19DndEP | |
| 177 | DNA sulfur modification protein DndD | |||
| 176 | DNA sulfur modification protein DndE | |||
| 177 | M | M.Eco4390DndDP (99% identity) | M.EcoP19DndDP | |
| 178 | sulfurtransferase DndC | |||
| 177 | DNA sulfur modification protein DndD | |||
| 178 | M | M.EcosB7ADndCP (99% identity) | M.EcoP19DndCP | |
| 181 | Uncharacterized protein | |||
| 178 | sulfurtransferase DndC | |||
| 181 | M | M.Eco4390DndBP (100% identity) | M.EcoP19DndBP | |
| 182 | uncharacterized protein b4286 | |||
| chromosome IV | ||||
| 264 | DamX, an inner membrane protein involved in bile | |||
| 265 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco7727DamP |
| 266 | Ribulose-phosphate 3-epimerase | |||
| 387 | FIG00638667: hypothetical protein | |||
| 388 | M | M.Ssp28760ORF20045P (99% identity) | ATGCAT | M.Eco7727ORF388P |
| 389 | DNA-binding protein Fis | |||
| 1782 | metal-dependent phosphohydrolase | |||
| 1783 | M | M.SflN116DcmP (100% identity) | CCWGG | M.Eco7727DcmP |
| 1784 | V | Very-short-patch mismatch repair endonuclease | V.Eco7727DcmP | |
| 1785 | Permease of the drug/metabolite transporter | |||
| 2191 | LygF | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco7727ORF2192P | |
| 2193 | 41 aa hypothetical protein | |||
| 2551 | 43 aa hypothetical protein | |||
| ??? | M | M.Eco8101CCORF25290P (100% identity) | M.Eco7727ORF2552P | |
| 2554 | DNA replication protein DnaC | |||
| 3023 | Phage replication protein | |||
| 3024 | M | M.Sen075ORF1078P (99% identity) | GATC | M.Eco7727ORF3024P |
| 3025 | Phage protein | |||
| plasmid II | ||||
| ??? | M | M.EcoS1720ORFAP (99% identity) | M.EcoRL465ORFIP | |
| plasmid III | ||||
| ??? | M | M.EcosS142ORF45980P (100% identity) | M.EcoRL465ORFJP | |
| plasmid p3521 | ||||
| ??? | YfcA | |||
| ??? | M | M.SenR219ORF25160P (97% identity) | M.Eco3521ORFAP | |
| ??? | YfbA | |||
| plasmid pM105_FII | ||||
| ??? | plasmid segregation protein | |||
| ??? | M | M.SenST46ORF25580P (100% identity) | M.EcoM105ORFBP | |
| ??? | YfcA protein | |||
| plasmid pM105_mF | ||||
| ??? | 103 aa hypothetical protein | |||
| ??? | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoM105ORFAP |
| ??? | cytoplasmic protein | |||
| plasmid pM107_FII | ||||
| ??? | plasmid segregation protein | |||
| ??? | M | M.SenST46ORF25580P (100% identity) | M.EcoM107ORFAP | |
| ??? | YfcA protein | |||
| plasmid pM109_FII | ||||
| ??? | plasmid segregation protein | |||
| ??? | M | M.SenST46ORF25580P (100% identity) | M.EcoM109ORFAP | |
| ??? | YfcA protein | |||
| plasmid pM110_FII | ||||
| ??? | plasmid segregation protein | |||
| ??? | M | M.Ecos69ORF26765P (100% identity) | M.EcoM110ORFAP | |
| ??? | YfcA protein | |||
| plasmid pM214_AC2 | ||||
| ??? | Uncharacterized protein | |||
| ??? | M | M.Vch11614ORFCP (100% identity) | M.EcoM214ORFAP | |
| ??? | Uncharacterized protein | |||
| ??? | TerC family protein | |||
| ??? | M | M.YrupYR1ORFCP (100% identity) | M.EcoM214ORFCP | |
| ??? | Uncharacterized protein | |||
| plasmid pM214_FII | ||||
| ??? | plasmid segregation protein | |||
| ??? | M | M.SenST46ORF25580P (100% identity) | M.EcoM214ORFDP | |
| ??? | YfcA protein | |||
| plasmid pM216_AC2 | ||||
| ??? | Uncharacterized protein | |||
| ??? | M | M.Vch11614ORFCP (100% identity) | M.EcoM216ORFAP | |
| ??? | Uncharacterized protein | |||
| ??? | TerC family protein | |||
| ??? | M | M.YrupYR1ORFCP (100% identity) | M.EcoM216ORFCP | |
| ??? | Uncharacterized protein | |||
| plasmid pM217_FII | ||||
| 20040 | plasmid segregation protein | |||
| 20041 | M | M.SenST46ORF25580P (100% identity) | M.EcoM217ORF20041P | |
| 20042 | YfcA protein | |||
| ??? | plasmid segregation protein | |||
| ??? | M | M.SenST46ORF25580P (100% identity) | M.EcoM217ORFAP | |
| ??? | YfcA protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 274 | Cell division protein DamX | |||
| 277 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoP19ORFBP |
| 279 | Ribulose-phosphate 3-epimerase | |||
| chromosome IV | ||||
| 4383 | 101 aa hypothetical protein | |||
| 4384 | M | M.CfrSK3ORF25330P (99% identity) | M.Eco7727ORF4384P | |
| 4385 | 70 aa hypothetical protein | |||