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Putative Desulfobacca acetoxidans DSM 11109 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 14336
Complete sequence: 3,282,536 bp
GenBank #: CP002629 (NC_015388)
REBASE acronym: Dac11109
Org_num: 6881
All begin Desac_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
73 | redox-active disulfide protein 2 | |||
74 | R | Protein of unknown function DUF318, | CCCNNNNNRTTC | Dac11109IVP |
75 | M | M2.Msp273VII (47% identity) | CCCNNNNNRTTC | M2.Dac11109IV |
76 | Protein of unknown function DUF2081 | |||
77 | M | M1.Msp273ORF2085P (79% identity) | CCCNNNNNRTTC | M1.Dac11109IV |
78 | 105 aa hypothetical protein | |||
907 | 188 aa hypothetical protein | |||
908 | S | S.Mch9957III (28% identity) | S.Dac11109ORF910P | |
909 | filamentation induced by cAMP protein Fic | |||
910 | M | M.Tth5018ORF14610P (71% identity) | M.Dac11109ORF910P | |
911 | 411 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
390 | O-methyltransferase family 3 | |||
??? | M | M.DspN47ORF20180P (60% identity) | RGATCY | M.Dac11109ORFAP |
392 | ABC transporter substrate-binding protein | |||
558 | DNA polymerase beta domain protein region | |||
559 | M | M.SmaMSU97ORF21030P (56% identity) | CCCGGG | M.Dac11109ORF559P |
560 | riboflavin biosynthesis protein RibD | |||
609 | Protein of unknown function DUF2335, membrane | |||
610 | M | M.Mta1123ORF1602P (59% identity) | GTAC | M.Dac11109II |
611 | DNA polymerase beta domain protein region | |||
698 | RNA-binding protein | |||
699 | RM | Pga1313ORF8960P (20% identity) | Dac11109ORF696P | |
700 | 339 aa hypothetical protein | |||
753 | SsrA-binding protein | |||
754 | RM | Dac11109ORF1226P (33% identity) | Dac11109ORF754P | |
755 | protein of unknown function UPF0153 | |||
972 | Asparaginyl-tRNA synthetase | |||
973 | RM | Dco806ORF26580P (57% identity) | Dac11109ORF973P | |
974 | 369 aa hypothetical protein | |||
1225 | prevent-host-death family protein | |||
1226 | RM | Dac11109ORF754P (33% identity) | Dac11109ORF1226P | |
1227 | 61 aa hypothetical protein | |||
1275 | pseudogene | |||
1276 | M | 167 aa hypothetical protein | TCTAGA | M.Dac11109ORF1276P |
1277 | Serine--glyoxylate transaminase | |||
1827 | PAS/PAC sensor hybrid histidine kinase | |||
1828 | M | M.DauMPORF708P (52% identity) | TCTAGA | M.Dac11109ORF1828P |
1829 | 2-oxoglutarate synthase | |||
2400 | Methylmalonyl-CoA decarboxylase | |||
2401 | M | M.MspLAm1ORF4650P (64% identity) | CTAG | M.Dac11109III |
2402 | 72 aa hypothetical protein | |||
2469 | metal-dependent phosphohydrolase HD sub domain | |||
2470 | M | M.Dac11109ORF2963P (76% identity) | CGCG | M.Dac11109ORF2470P |
2471 | Antibiotic biosynthesis monooxygenase | |||
2852 | GTP-binding protein lepA | |||
2853 | M | M.MoxORF3047P (77% identity) | M.Dac11109ORF2853P | |
2854 | aspartyl-tRNA synthetase | |||
2962 | pseudogene | |||
2963 | M | M.Dac11109ORF2470P (76% identity) | CGCG | M.Dac11109ORF2963P |
2964 | pseudogene | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2432 | two component, sigma54 specific, transcriptional | |||
2433 | M | M.TelBORF1481P (50% identity) | GACGA | M.Dac11109I |
2434 | 246 aa hypothetical protein | |||
2435 | R | TelBORF1481P (69% identity) | GACGA | Dac11109IP |
2436 | 115 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
879 | 100 aa hypothetical protein | |||
880 | R | PbaMalM14McrBP (43% identity) | Dac11109McrBP | |
881 | R | DauMPMcrCP (42% identity) | Dac11109McrCP | |
882 | DNA binding domain protein, excisionase family |