Helicobacter pylori 2018 |
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Putative Helicobacter pylori 2018 RM systems
Ref: Avasthi,T.S. et al. unpublished
REBASE ref # 12924
Complete sequence: 1,562,832 bp
GenBank #: CP002572
REBASE acronym: Hpy2018
Org_num: 6820
All begin hp2018_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 443 | Polyphosphate kinase | |||
| 444 | S | S.Hpy908ORF455P (100% identity) | S.Hpy2018ORF445P | |
| 445 | M | M.Hpy908ORF455P (100% identity) | M.Hpy2018ORF445P | |
| ??? | R | Hpy328ORF5205P (91% identity) | Hpy2018ORF445P | |
| 448 | 631 aa hypothetical protein | |||
| 828 | Hydroxyethylthiazole kinase | |||
| 829 | R | Hpy908ORF863P (100% identity) | Hpy2018ORF832P | |
| ??? | S | typeI restriction-modification system subunit S | S.Hpy2018ORF832P | |
| 832 | M | M.Hpy908ORF863P (100% identity) | M.Hpy2018ORF832P | |
| 833 | Membrane-associated phospholipid phosphatase | |||
| 1467 | Thymidylate synthase | |||
| 1468 | S | S.Hpy908ORF1522P (100% identity) | S.Hpy2018ORF1469P | |
| ??? | M | M.Hpy908ORF1522P (100% identity) | M.Hpy2018ORF1469P | |
| 1470 | R | Hpy908ORF1522P (100% identity) | Hpy2018ORF1469P | |
| 1471 | predicted metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 54 | Agmatine deiminase | |||
| 55 | M | M1.Hpy908ORF54P (100% identity) | CCTC | M1.Hpy2018ORF55P |
| 56 | M | M2.Hpy908ORF54P (100% identity) | CCTC | M2.Hpy2018ORF55P |
| 57 | 419 aa hypothetical protein | |||
| 56 | 185 aa hypothetical protein | |||
| 57 | R | Hpy908ORF57P (100% identity) | CCTTC | Hpy2018ORF58P |
| 58 | M | M.Hpy908ORF57P (100% identity) | CCTTC | M.Hpy2018ORF58P |
| 59 | Proline/sodium/Propionate symporter | |||
| 100 | 329 aa hypothetical protein | |||
| 101 | M | M.Hpy908ORF102P (99% identity) | GATC | M.Hpy2018ORF101P |
| 102 | alpha 1,2 fucosyl transferase | |||
| 268 | Exodeoxyribonuclease VII large subunit | |||
| 269 | M | M.Hpy908ORF272P (100% identity) | TCGA | M.Hpy2018ORF269P |
| 270 | 29 aa hypothetical protein | |||
| 270 | 29 aa hypothetical protein | |||
| ??? | R | Hpy908ORF277P (100% identity) | CCGG | Hpy2018ORF273P |
| 273 | M | M.HpyG004II (100% identity) | CCGG | M.Hpy2018ORF273P |
| 274 | ClpB protein | |||
| 460 | Glutamyl-tRNA synthetase | |||
| ??? | M | M.Hpy908ORF471P (100% identity) | ATTAAT | M.Hpy2018ORF4611P |
| 4613 | adenine specific DNA methyltransferase | |||
| 462 | GTP-binding protein | |||
| 463 | M | M.Hpy908ORF475P (100% identity) | ACNGT | M.Hpy2018ORF463P |
| ??? | R | Hpy908ORF475P (100% identity) | ACNGT | Hpy2018ORF463P |
| 4651 | DNA-cytosine methyltransferase | |||
| ??? | 207 aa hypothetical protein | |||
| 4651 | M | M.Hpy908ORF478P (45% identity) | ACGT | M1.Hpy2018ORF4651P |
| 4652 | M | M.Hpy908ORF478P (39% identity) | ACGT | M2.Hpy2018ORF4651P |
| ??? | R | Hpy908ORF478P (100% identity) | ACGT | Hpy2018ORF4651P |
| 467 | Catalase | |||
| 482 | DNA gyrase subunit B | |||
| 483 | M | M.Hpy908ORF500P (100% identity) | GTAC | M.Hpy2018ORF483P |
| 484 | R | Hpy908ORF500P (100% identity) | GTAC | Hpy2018ORF483P |
| 485 | metalloendopeptidase like protein | |||
| 657 | oxidoreductase,ferredoxin-type protein | |||
| ??? | RM | Hpy2017ORF6571P (100% identity) | Hpy2018ORF6581P | |
| 659 | Phage protein | |||
| 674 | Polysaccharide biosynthesis protein | |||
| 675 | M | type II DNA modification enzyme | CCNNGG | M.Hpy2018ORF675P |
| 676 | 37 aa hypothetical protein | |||
| 677 | R | Hpy908ORF696P (100% identity) | CCNNGG | Hpy2018ORF675P |
| 678 | Acetone carboxylase gamma subunit | |||
| 892 | Flagellar hook protein | |||
| 893 | R | Hpy908ORF923P (100% identity) | GTNNAC | Hpy2018ORF894P |
| 894 | M | M.Hpy2017ORF893P (100% identity) | GTNNAC | M.Hpy2018ORF894P |
| 8951 | ATP-dependent DNA helicase | |||
| 1041 | Biotin carboxylase of acetyl-CoA carboxylase | |||
| 1042 | M | M.HpyPO06XI (100% identity) | TCNNGA | M.Hpy2018ORF1042P |
| 1043 | R | HpyK262ORF6170P (100% identity) | TCNNGA | Hpy2018ORF1042P |
| 1044 | 201 aa hypothetical protein | |||
| 1077 | 144 aa hypothetical protein | |||
| 1078 | M | M.Hpy908ORF1117P (100% identity) | GCGC | M.Hpy2018ORF1078P |
| 1079 | flgM protein | |||
| 1169 | Haloacid dehalogenase/epoxide hydrolase family | |||
| 1170 | M | M.Hpy908ORF1210P (100% identity) | CATG | M.Hpy2018ORF1170P |
| 1171 | Serine acetyltransferase | |||
| 1313 | carboxy terminal protease | |||
| 1314 | R | Hpy908ORF1355P (100% identity) | GANTC | Hpy2018ORF1315P |
| 1315 | M | M.Hpy908ORF1355P (100% identity) | GANTC | M.Hpy2018ORF1315P |
| 1316 | Adenine specific DNA methyltransferase | |||
| 1315 | adenine specific DNA methyltransferase | |||
| ??? | RM | HpyCO6ORF6685P (94% identity) | Hpy2018ORF1318P | |
| 1319 | Nicotinate-nucleotide | |||
| 1328 | YjeF family protein | |||
| 1329 | R | type IIS restriction enzyme R protein | GAAGA | Hpy2018ORF1330P |
| 1330 | M | M1.Hpy2017ORF1326P (100% identity) | GAAGA | M1.Hpy2018ORF1330P |
| 1331 | M | M2.Hpy2017ORF1326P (100% identity) | GAAGA | M2.Hpy2018ORF1330P |
| 1332 | Type III restriction-modification system | |||
| 1356 | lipopolysaccharide biosynthesis protein | |||
| 1357 | M | M.HpyU420VI (100% identity) | GAATTC | M.Hpy2018ORF1357P |
| 1358 | R | HpyU420VIP (100% identity) | GAATTC | Hpy2018ORF1357P |
| 1359 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1406 | DNA polymerase I | |||
| ??? | S | S.Hpy2017ORF14062P (100% identity) | S.Hpy2018ORF14081P | |
| ??? | RM | Hpy2017ORF14062P (100% identity) | Hpy2018ORF14081P | |
| 1409 | 185 aa hypothetical protein | |||
| 1452 | pseudogene | |||
| ??? | RM | Hpy908ORF1504P (92% identity) | Hpy2018ORF1453P | |
| 1455 | type III restriction enzyme, res subunit | |||
| 1489 | 67 aa hypothetical protein | |||
| 1490 | M | M.HpyU105XI (100% identity) | TGCA | M.Hpy2018ORF1490P |
| 1491 | R | Hpy908ORF1546P (100% identity) | TGCA | Hpy2018ORF1490P |
| 1492 | transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1331 | type IIS restriction enzyme M2 protein | |||
| 1332 | M | M1.Hpy2017ORF1328P (100% identity) | M1.Hpy2018ORF1332P | |
| ??? | M | M.Hpy908ORF1370P (100% identity) | M2.Hpy2018ORF1332P | |
| 1334 | R | Hpy908ORF1370P (100% identity) | Hpy2018ORF1332P | |
| 1335 | Rod shape-determining protein | |||
| 1345 | endonuclease G | |||
| 1346 | M | M.Hpy908ORF1383P (100% identity) | M.Hpy2018ORF1346P | |
| ??? | R | Hpy2017ORF1342P (99% identity) | Hpy2018ORF1346P | |
| 1348 | Biotin synthase | |||
| ??? | type IIS restriction/modification enzyme | |||
| 1455 | R | Hpy908ORF1507P (100% identity) | Hpy2018ORF14561P | |
| ??? | M | M.HpyU406ORF6785P (98% identity) | M.Hpy2018ORF14561P | |
| 1457 | ATP-dependent DNA helicase | |||