Clostridioides difficile Z1322PCD0012 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Clostridioides difficile Z1322PCD0012 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
Complete sequence: 4,046,300 bp
GenBank #: CP149708
REBASE acronym: Cdi12
Org_num: 76818
All begin WIS27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15505 | DUF262 domain-containing HNH endonuclease family | |||
| 15510 | R | CdiCd24ORF1400P (100% identity) | CANNNNNNNTAAAG | Cdi12ORF15535P |
| 15515 | 142 aa hypothetical protein | |||
| 15520 | nucleotidyltransferase domain-containing | |||
| 15525 | 102 aa hypothetical protein | |||
| 15530 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi12ORF15535P |
| 15535 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi12ORF15535P |
| 15540 | tagatose-bisphosphate aldolase subunit GatY | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11435 | 224 aa hypothetical protein | |||
| 11440 | RM | Cdo002IV (99% identity) | GCMGAAG | Cdi12ORF11440P |
| 11445 | C | C.PdiZ31ORF415P (100% identity) | C.Cdi12ORF11440P | |
| 11450 | 53 aa hypothetical protein | |||
| 15940 | 50 aa hypothetical protein | |||
| 15945 | M | M.CdiST42DndCP (100% identity) | M.Cdi12DndCP | |
| 15950 | AAA family ATPase | |||
| 15945 | DNA phosphorothioation system sulfurtransferase | |||
| 15950 | M | M.CdiST42DndDP (100% identity) | M.Cdi12DndDP | |
| 15955 | DndE family protein | |||
| 15950 | AAA family ATPase | |||
| 15955 | M | M.CdiCd24DndEP (100% identity) | M.Cdi12DndEP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 15955 | DndE family protein | |||
| ??? | R | Cdi43DptHP (100% identity) | Cdi12DptHP | |
| 15975 | DNA phosphorothioation-dependent restriction | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 15975 | R | CdiST42DptGP (100% identity) | Cdi12DptGP | |
| 15980 | DNA phosphorothioation-dependent restriction | |||
| 15975 | DNA phosphorothioation-dependent restriction | |||
| 15980 | R | CdiST42DptFP (100% identity) | Cdi12DptFP | |
| 15985 | DUF6809 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3565 | cell division protein | |||
| 3570 | R | Pdi6602McrBP (100% identity) | Cdi12McrBP | |
| 3575 | R | Cdo002McrCP (100% identity) | Cdi12McrCP | |
| 3580 | sigma 54-interacting transcriptional regulator | |||