Clostridioides difficile Z1322PCD0028 |
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Putative Clostridioides difficile Z1322PCD0028 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
| Sequence length: | GenBank #: | |
| Chromosome: | 4,262,866 bp | CP149698 |
| plasmid pZ1322PCD0028-2: | 132,180 bp | CP149699 |
REBASE acronym: Cdi28
Org_num: 76824
All begin WIR68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16595 | DUF262 domain-containing HNH endonuclease family | |||
| 16600 | R | CdiS122ORF2565P (100% identity) | TAGNNNNNRTGAA | Cdi28ORF16625P |
| 16605 | 142 aa hypothetical protein | |||
| 16610 | nucleotidyltransferase domain-containing | |||
| 16615 | 102 aa hypothetical protein | |||
| 16620 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.Cdi28ORF16625P |
| 16625 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.Cdi28ORF16625P |
| 16630 | tagatose-bisphosphate aldolase subunit GatY | |||
| 17150 | 56 aa hypothetical protein | |||
| 17155 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | Cdi28ORF17170P |
| 17160 | 423 aa hypothetical protein | |||
| 17165 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.Cdi28ORF17170P |
| 17170 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.Cdi28ORF17170P |
| 17175 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5500 | 111 aa hypothetical protein | |||
| 5505 | M | M.PdiZ31ORF1645P (99% identity) | M.Cdi28ORF5505P | |
| 5510 | 76 aa hypothetical protein | |||
| 8335 | 44 aa hypothetical protein | |||
| 8340 | M | M.CdiS0352ORF4245P (100% identity) | GATC | M.Cdi28ORF8340P |
| 8345 | 65 aa hypothetical protein | |||
| 15870 | 69 aa hypothetical protein | |||
| 15875 | M | M.PdiZ31ORF1645P (100% identity) | M.Cdi28ORF15875P | |
| 15880 | 111 aa hypothetical protein | |||
| 16985 | class B sortase | |||
| 16990 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi28ORF16990P |
| 16995 | DrmE family protein | |||
| 17065 | 383 aa hypothetical protein | |||
| 17070 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.Cdi28ORF17070P |
| 17075 | M | M2.CdiS122ORF3010P (100% identity) | CATCG | M2.Cdi28ORF17070P |
| 17080 | recombinase family protein | |||
| plasmid pZ1322PCD0028-2 | ||||
| 19940 | helix-turn-helix transcriptional regulator | |||
| 19945 | RM | Cdi161ORF20760P (99% identity) | RGAAAGR | Cdi28ORF19945P |
| 19950 | 112 aa hypothetical protein | |||