Clostridioides difficile Z1322PCD0060 |
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Putative Clostridioides difficile Z1322PCD0060 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
Complete sequence: 3,973,604 bp
GenBank #: CP149673
REBASE acronym: Cdi0060
Org_num: 76832
All begin WIS29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3200 | tagatose-bisphosphate aldolase subunit GatY | |||
| 3205 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi0060ORF3205P |
| 3210 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi0060ORF3205P |
| 3215 | 102 aa hypothetical protein | |||
| 3220 | nucleotidyltransferase domain-containing | |||
| 3225 | 142 aa hypothetical protein | |||
| 3230 | R | CdiCd24ORF1400P (100% identity) | CANNNNNNNTAAAG | Cdi0060ORF3205P |
| 3235 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2760 | DUF6809 family protein | |||
| 2765 | R | CdiST42DptFP (100% identity) | Cdi0060DptFP | |
| 2770 | DNA phosphorothioation-dependent restriction | |||
| 2765 | DNA phosphorothioation-dependent restriction | |||
| 2770 | R | CdiST42DptGP (100% identity) | Cdi0060DptGP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 2770 | DNA phosphorothioation-dependent restriction | |||
| ??? | R | CdiST42DptHP (99% identity) | Cdi0060DptHP | |
| 2785 | DndE family protein | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 2785 | M | M.CdiCd24DndEP (100% identity) | M.Cdi0060DndEP | |
| 2790 | AAA family ATPase | |||
| 2785 | DndE family protein | |||
| 2790 | M | M.CdiST42DndDP (100% identity) | M.Cdi0060DndDP | |
| 2795 | DNA phosphorothioation system sulfurtransferase | |||
| 2790 | AAA family ATPase | |||
| 2795 | M | M.CdiST42DndCP (100% identity) | M.Cdi0060DndCP | |
| 2800 | 50 aa hypothetical protein | |||
| 4555 | Rrf2 family transcriptional regulator | |||
| 4560 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi0060ORF4560P |
| 4565 | patatin-like phospholipase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8275 | cell division protein | |||
| 8280 | R | Pdi6602McrBP (100% identity) | Cdi0060McrBP | |
| 8285 | R | Cdo002McrCP (100% identity) | Cdi0060McrCP | |
| 8290 | sigma 54-interacting transcriptional regulator | |||