Clostridioides difficile Z1322PCD0071 |
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Putative Clostridioides difficile Z1322PCD0071 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
Complete sequence: 3,983,773 bp
GenBank #: CP149663
REBASE acronym: Cdi0071
Org_num: 76837
All begin WIR87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3145 | tagatose-bisphosphate aldolase subunit GatY | |||
| 3150 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi0071ORF3150P |
| 3155 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi0071ORF3150P |
| 3160 | 102 aa hypothetical protein | |||
| 3165 | nucleotidyltransferase domain-containing | |||
| 3170 | 142 aa hypothetical protein | |||
| 3175 | R | CdiCd24ORF1400P (100% identity) | CANNNNNNNTAAAG | Cdi0071ORF3150P |
| 3180 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2710 | DUF6809 family protein | |||
| 2715 | R | CdiST42DptFP (100% identity) | Cdi0071DptFP | |
| 2720 | DNA phosphorothioation-dependent restriction | |||
| 2715 | DNA phosphorothioation-dependent restriction | |||
| 2720 | R | CdiST42DptGP (100% identity) | Cdi0071DptGP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 2720 | DNA phosphorothioation-dependent restriction | |||
| ??? | R | CdiST42DptHP (99% identity) | Cdi0071DptHP | |
| 2735 | DndE family protein | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 2735 | M | M.CdiCd24DndEP (100% identity) | M.Cdi0071DndEP | |
| 2740 | AAA family ATPase | |||
| 2735 | DndE family protein | |||
| 2740 | M | M.CdiST42DndDP (100% identity) | M.Cdi0071DndDP | |
| 2745 | DNA phosphorothioation system sulfurtransferase | |||
| 2740 | AAA family ATPase | |||
| 2745 | M | M.CdiST42DndCP (100% identity) | M.Cdi0071DndCP | |
| 2750 | 50 aa hypothetical protein | |||
| 4500 | Rrf2 family transcriptional regulator | |||
| 4505 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi0071ORF4505P |
| 4510 | patatin-like phospholipase family protein | |||
| 13440 | 69 aa hypothetical protein | |||
| 13445 | M | M.Pdi30ORF7740P (100% identity) | M.Cdi0071ORF13445P | |
| 13450 | 58 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8215 | cell division protein | |||
| 8220 | R | Pdi6602McrBP (100% identity) | Cdi0071McrBP | |
| 8225 | R | Cdo002McrCP (100% identity) | Cdi0071McrCP | |
| 8230 | sigma 54-interacting transcriptional regulator | |||