Escherichia coli GN06098 |
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Putative Escherichia coli GN06098 RM systems
Ref: Parsons,J.B. et al. Proc Natl Acad Sci U S A 121 (3), e2314514121 (2024)
REBASE ref # 38499
Complete sequence: 5,255,835 bp
GenBank #: CP147616
REBASE acronym: Eco098
Org_num: 76378
All begin WCU08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19730 | type IV toxin-antitoxin system AbiEi family | |||
| 19735 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco098ORF19740P |
| 19740 | M | M.Eco652ORF19450P (100% identity) | AAAGNNNNGTT | M.Eco098ORF19740P |
| 19745 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco098ORF19740P |
| 19750 | 156 aa hypothetical protein | |||
| 21550 | restriction endonuclease | |||
| 21555 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco098ORF21555P |
| 21560 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco098ORF21555P |
| 21565 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco098ORF21555P |
| 21570 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1695 | cell division protein DamX | |||
| 1700 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco098DamP |
| 1705 | ribulose-phosphate 3-epimerase | |||
| 2295 | DUF2556 family protein | |||
| 2300 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco098ORF2300P |
| 2305 | DNA-binding transcriptional regulator Fis | |||
| 6285 | 257 aa hypothetical protein | |||
| 6290 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.Eco098ORF6290P |
| 6295 | R | Sso8033ORF3755P (99% identity) | CCWGG | Eco098ORF6290P |
| 6300 | 121 aa hypothetical protein | |||
| 10065 | phosphohydrolase | |||
| 10070 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco098DcmP |
| 10075 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco098DcmP |
| 10080 | drug/metabolite exporter YedA | |||
| 10945 | antiterminator Q family protein | |||
| 10950 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M1.Eco098ORF10950P |
| 10955 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.Eco098ORF10950P |
| 10960 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.Eco098ORF10950P |
| 10965 | TrmB family transcriptional regulator | |||
| 10970 | M | M1.EcosS3ORF2905P (100% identity) | M2.Eco098ORF10950P | |
| 10975 | DUF6645 domain-containing protein | |||
| 13955 | DUF3927 family protein | |||
| 13970 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco098ORF13970P |
| 13975 | TrmB family transcriptional regulator | |||
| 16235 | helix-turn-helix transcriptional regulator | |||
| 16240 | M | M.KpnYN1ORFGP (89% identity) | M.Eco098ORF16240P | |
| 16245 | 71 aa hypothetical protein | |||
| 21910 | McrC family protein | |||
| 21915 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco098ORF21920P |
| 21920 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco098ORF21920P |
| 21925 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco098ORF21920P |
| 21930 | helix-turn-helix domain-containing protein | |||
| 23220 | response regulator receiver domain | |||
| 23225 | R | EcosS3ORF15775P (100% identity) | Eco098ORF23230P | |
| 23230 | M | M.EcosS3ORF15775P (100% identity) | M.Eco098ORF23230P | |
| 23235 | conjugal transfer protein TraG N-terminal | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21545 | BrnT family toxin | |||
| 21550 | R | Ecou021MrrP (100% identity) | Eco098MrrP | |
| 21555 | class I SAM-dependent DNA methyltransferase | |||
| 21890 | glycosyltransferase family 2 protein | |||
| 21895 | R | EcosS3McrBP (54% identity) | Eco098McrBAP | |
| 21900 | IS3-like element ISEc52 family transposase | |||
| 21905 | R | EcosS9McrBP (59% identity) | Eco098McrBBP | |
| 21910 | R | EcosS9McrCP (100% identity) | Eco098McrCP | |
| 21915 | Alw26I/Eco31I/Esp3I family type II restriction | |||