Escherichia coli GN04096 |
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Putative Escherichia coli GN04096 RM systems
Ref: Parsons,J.B. et al. Proc Natl Acad Sci U S A 121 (3), e2314514121 (2024)
REBASE ref # 38499
| Sequence length: | GenBank #: | |
| Chromosome: | 5,115,695 bp | CP147559 |
| plasmid unnamed1: | 105,378 bp | CP147560 |
REBASE acronym: Eco096
Org_num: 76427
All begin WCU04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18910 | type IV toxin-antitoxin system AbiEi family | |||
| 18915 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco096ORF18920P |
| 18920 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco096ORF18920P |
| 18925 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco096ORF18920P |
| 18930 | 156 aa hypothetical protein | |||
| 20990 | restriction endonuclease | |||
| 20995 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco096ORF20995P |
| 21000 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco096ORF20995P |
| 21005 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco096ORF20995P |
| 21010 | endoribonuclease SymE | |||
| plasmid unnamed1 | ||||
| 25345 | IS1-like element IS1A family transposase | |||
| 25350 | M | M.EcoEC0899ORF26310P (100% identity) | M.Eco096ORF25350P | |
| 25355 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2295 | DUF2556 family protein | |||
| 2300 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco096ORF2300P |
| 2305 | DNA-binding transcriptional regulator Fis | |||
| 6670 | DUF1382 family protein | |||
| 6675 | M | M.Esp911AORF3194P (100% identity) | GATC | M.Eco096ORF6675P |
| 6680 | PerC family transcriptional regulator | |||
| 9810 | phosphohydrolase | |||
| 9815 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco096DcmP |
| 9820 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco096DcmP |
| 9825 | drug/metabolite exporter YedA | |||
| 13105 | DUF3927 family protein | |||
| 13120 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco096ORF13120P |
| 13125 | TrmB family transcriptional regulator | |||
| 15390 | helix-turn-helix transcriptional regulator | |||
| 15395 | M | M.KpnYN1ORFGP (89% identity) | M.Eco096ORF15395P | |
| 15400 | 71 aa hypothetical protein | |||
| 21350 | McrC family protein | |||
| 21355 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco096ORF21360P |
| 21360 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco096ORF21360P |
| 21365 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco096ORF21360P |
| 21370 | helix-turn-helix domain-containing protein | |||
| plasmid unnamed1 | ||||
| 25275 | 73 aa hypothetical protein | |||
| 25280 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco096ORF25280P |
| 25285 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20985 | BrnT family toxin | |||
| 20990 | R | Ecou021MrrP (100% identity) | Eco096MrrP | |
| 20995 | class I SAM-dependent DNA methyltransferase | |||
| 21335 | glycosyltransferase family 2 protein | |||
| 21340 | R | EcosS3McrBP (100% identity) | Eco096McrBP | |
| 21345 | IS3-like element ISEc52 family transposase | |||
| 21350 | R | Eco4204McrCP (100% identity) | Eco096McrCP | |
| 21355 | Alw26I/Eco31I/Esp3I family type II restriction | |||