Escherichia coli GN03139 |
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Putative Escherichia coli GN03139 RM systems
Ref: Parsons,J.B. et al. Proc Natl Acad Sci U S A 121 (3), e2314514121 (2024)
REBASE ref # 38499
| Sequence length: | GenBank #: | |
| Chromosome: | 4,964,251 bp | CP147532 |
| plasmid unnamed1: | 105,752 bp | CP147533 |
REBASE acronym: Eco3139
Org_num: 76368
All begin WCU35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3570 | transposase domain-containing protein | |||
| 3575 | M | M.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | M.Eco3139ORF3575P |
| 3580 | AAA family ATPase | |||
| 3585 | S | S2.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | S.Eco3139ORF3575P |
| 3590 | R | SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | Eco3139ORF3575P |
| 3595 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1935 | cell division protein DamX | |||
| 1940 | M | M.Eco551DamP (100% identity) | GATC | M.Eco3139DamP |
| 1945 | ribulose-phosphate 3-epimerase | |||
| 2465 | DUF2556 family protein | |||
| 2470 | M | M.Ecost20ORFAP (100% identity) | ATGCAT | M.Eco3139ORF2470P |
| 2475 | DNA-binding transcriptional regulator Fis | |||
| 13820 | drug/metabolite exporter YedA | |||
| 13825 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco3139DcmP |
| 13830 | M | M.SflWW1DcmP (100% identity) | CCWGG | M.Eco3139DcmP |
| 13835 | phosphohydrolase | |||
| 20185 | RM | EcoXDLORF21245P (100% identity) | Eco3139ORF20185P | |
| 20190 | DEAD/DEAH box helicase | |||
| 20230 | HNH endonuclease | |||
| 20235 | R | EcoXDLORF21295P (100% identity) | Eco3139ORF20235P | |
| 20240 | 332 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 23955 | 103 aa hypothetical protein | |||
| 23960 | M | M.UbapRSB107ORFAP (66% identity) | M.Eco3139ORF23960P | |
| 23965 | conjugal transfer mating-pair stabilization | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19885 | endoribonuclease SymE | |||
| ??? | R | EcoSBF22GmrSDP (100% identity) | Eco3139GmrSDP | |
| 19900 | 15 aa hypothetical protein | |||