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Putative Xanthomonas campestris pv. campestris WHRI 8978 RM systems
Ref: Hussain,R.M.F. et al. unpublished
REBASE ref # 38361
Complete sequence: 5,120,633 bp
GenBank #: CP142009
REBASE acronym: Xca8978
Org_num: 75857
All begin VDR56_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
6035 | SprT family zinc-dependent metalloprotease | |||
6040 | R | XcaXY11ORF6160P (100% identity) | CAAGNNNNNCTTA | Xca8978ORF6060P |
6045 | S | S2.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | S.Xca8978ORF6060P |
6050 | 85 aa hypothetical protein | |||
6055 | BRO family protein | |||
6060 | M | M.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | M.Xca8978ORF6060P |
6065 | restriction endonuclease subunit S | |||
16495 | 98 aa hypothetical protein | |||
16500 | R | XcaSB80ORF16515P (100% identity) | Xca8978ORF16515P | |
16505 | S | S.XcaTJORFEP (100% identity) | S.Xca8978ORF16515P | |
16510 | virulence RhuM family protein | |||
16515 | M | M.XcaTJORFEP (100% identity) | M.Xca8978ORF16515P | |
16520 | restriction endonuclease | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
2985 | IS3-like element IS1404 family transposase | |||
2990 | R | XcaYORFAP (100% identity) | Xca8978ORF2990P | |
2995 | 90 aa hypothetical protein | |||
10575 | AAA family ATPase | |||
??? | M | M.XcaYORFEP (59% identity) | M.Xca8978ORF10580P | |
10585 | DNA topoisomerase III | |||
22315 | HigA family addiction module antitoxin | |||
22320 | M | M.XcaSB80ORF22350P (100% identity) | M.Xca8978ORF22320P | |
22325 | exodeoxyribonuclease V subunit beta | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
16515 | class I SAM-dependent DNA methyltransferase | |||
16520 | R | XcaYMrrP (100% identity) | Xca8978MrrP | |
16525 | type II toxin-antitoxin system RelE/ParE family | |||
22275 | RluA family pseudouridine synthase | |||
22280 | R | XcaYMrr2P (90% identity) | Xca8978Mrr2P | |
22285 | topoisomerase DNA-binding C4 zinc finger |