Escherichia coli REF2 |
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Putative Escherichia coli REF2 RM systems
Ref: Karami,N. et al. unpublished
REBASE ref # 38216
| Sequence length: | GenBank #: | |
| Chromosome: | 4,991,079 bp | CP107230 |
| plasmid pREF2-1179-1: | 106,993 bp | CP107231 |
REBASE acronym: EcoREF2
Org_num: 75261
All begin OGY63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16925 | endoribonuclease SymE | |||
| 16930 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoREF2ORF16940P |
| 16935 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoREF2ORF16940P |
| 16940 | M | M.Eco0042ORF17070P (100% identity) | RTACNNNNGTG | M.EcoREF2ORF16940P |
| 16945 | restriction endonuclease | |||
| 18745 | ash family protein | |||
| 18750 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoREF2ORF18755P |
| 18755 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoREF2ORF18755P |
| 18760 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoREF2ORF18755P |
| 18765 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pREF2-1179-1 | ||||
| 24835 | IS1-like element IS1A family transposase | |||
| 24840 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoREF2ORF24850P |
| 24845 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoREF2ORF24850P |
| 24850 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoREF2ORF24850P |
| 24855 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10765 | DNA-binding transcriptional regulator Fis | |||
| 10770 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoREF2ORF10770P |
| 10775 | DUF2556 family protein | |||
| 11375 | ribulose-phosphate 3-epimerase | |||
| 11380 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoREF2DamP |
| 11385 | cell division protein DamX | |||
| 16575 | helix-turn-helix domain-containing protein | |||
| 16580 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoREF2ORF16580P |
| 16585 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoREF2ORF16580P |
| 16590 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoREF2ORF16580P |
| 16595 | McrC family protein | |||
| 21925 | 71 aa hypothetical protein | |||
| 21930 | M | M.KpnYN1ORFGP (89% identity) | M.EcoREF2ORF21930P | |
| 21935 | helix-turn-helix domain-containing protein | |||
| 24205 | TrmB family transcriptional regulator | |||
| 24210 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoREF2ORF24210P |
| 24225 | DUF3927 family protein | |||
| plasmid pREF2-1179-1 | ||||
| 24775 | 73 aa hypothetical protein | |||
| 24780 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoREF2ORF24780P |
| 24785 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16590 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16595 | R | EcosS9McrCP (100% identity) | EcoREF2McrCP | |
| 16600 | R | EcosS3McrBP (100% identity) | EcoREF2McrBP | |
| 16605 | glycosyltransferase | |||
| 16940 | type I restriction-modification system subunit | |||
| 16945 | R | Ecou021MrrP (100% identity) | EcoREF2MrrP | |
| 16950 | BrnT family toxin | |||