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Putative Clostridioides difficile cd221108_barcode08 RM systems
Ref: White,R.T. and Bloomfield,M. unpublished
REBASE ref # 38241
Complete sequence: 4,168,836 bp
GenBank #: CP144679
REBASE acronym: Cdi08
Org_num: 75319
All begin cd221108_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3166 | 687 aa hypothetical protein | |||
3167 | R | CdiS122ORF2565P (100% identity) | TAGNNNNNRTGAA | Cdi08ORF3172P |
3168 | 142 aa hypothetical protein | |||
3169 | 126 aa hypothetical protein | |||
3170 | 102 aa hypothetical protein | |||
3171 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.Cdi08ORF3172P |
3172 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.Cdi08ORF3172P |
3173 | D-tagatose-1,6-bisphosphate aldolase subunit | |||
3279 | 56 aa hypothetical protein | |||
3280 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | Cdi08ORF3283P |
3281 | 423 aa hypothetical protein | |||
3282 | S | S.Pdi30ORF18845P (99% identity) | ATTYNNNNNCTTC | S.Cdi08ORF3283P |
3283 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.Cdi08ORF3283P |
3284 | 115 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
2910 | patatin-like phospholipase family protein | |||
2912 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi08ORF2912P |
2913 | 132 aa hypothetical protein | |||
3245 | 33 aa hypothetical protein | |||
3246 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi08ORF3246P |
3247 | 872 aa hypothetical protein | |||
3261 | 383 aa hypothetical protein | |||
3262 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.Cdi08ORF3262P |
3263 | M | M2.CdiS122ORF3010P (100% identity) | CATCG | M2.Cdi08ORF3262P |
3264 | 521 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2146 | DNA-binding transcriptional activator HyfR | |||
2147 | R | Pdi30McrCP (100% identity) | Cdi08McrCP | |
2148 | R | Pdi30McrBP (100% identity) | Cdi08McrBP | |
2149 | 240 aa hypothetical protein |