Halopseudomonas pachastrellae ST23RT_ISS_721 |
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Putative Halopseudomonas pachastrellae ST23RT_ISS_721 RM systems
Ref: Alam,I. et al. unpublished
REBASE ref # 38269
Complete sequence: 4,385,503 bp
GenBank #: CP143554
REBASE acronym: Hpa1
Org_num: 75427
All begin UMZ34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9175 | N-6 DNA methylase | |||
| 9180 | M | M.Hpa25ORF17355P (94% identity) | M.Hpa1ORF9180P | |
| 9185 | S | S.Pst10450I (50% identity) | S.Hpa1ORF9180P | |
| 9190 | 172 aa hypothetical protein | |||
| 9195 | 146 aa hypothetical protein | |||
| 9200 | R | Ppa46540ORF15040P (7% identity) | Hpa1ORF9180AP | |
| 9205 | R | PspT132ORF555P (8% identity) | Hpa1ORF9180BP | |
| 9210 | 40 aa hypothetical protein | |||
| 9215 | R | Ppa46540ORF15040P (18% identity) | Hpa1ORF9180CP | |
| 9220 | R | Hpa25ORF17355P (51% identity) | Hpa1ORF9180DP | |
| 9225 | SprT family zinc-dependent metalloprotease | |||
| 12765 | enoyl-CoA hydratase-related protein | |||
| 12770 | R | Hpa25ORFAAP (75% identity) | Hpa1ORF12810AP | |
| 12775 | R | Psa8338ORF2972P (8% identity) | Hpa1ORF12810BP | |
| 12780 | R | Psa8338ORF2972P (14% identity) | Hpa1ORF12810CP | |
| 12785 | R | Psa8338ORF2972P (43% identity) | Hpa1ORF12810DP | |
| 12790 | R | Hpa25ORFAFP (75% identity) | Hpa1ORF12810EP | |
| 12795 | restriction endonuclease subunit S | |||
| 12800 | IS30-like element ISPsp7 family transposase | |||
| 12805 | S | S.Hpa25ORFABP (83% identity) | S.Hpa1ORF12810P | |
| 12810 | M | M.Psa8338ORF2972P (44% identity) | M.Hpa1ORF12810BP | |
| 12815 | IS21 family transposase | |||
| 12820 | IS21-like element helper ATPase IstB | |||
| 12825 | M | M.Psa8338ORF2972P (46% identity) | M.Hpa1ORF12810AP | |
| 12830 | competence protein CoiA family protein | |||
| 21110 | integrase core domain-containing protein | |||
| 21115 | R | Poc100277ORF17970P (97% identity) | Hpa1ORF21145P | |
| 21120 | McrC family protein | |||
| 21125 | AAA family ATPase | |||
| 21130 | S | S.Ppa46540ORF17825P (31% identity) | S3.Hpa1ORF21145P | |
| 21135 | S | S.Ppa46540ORF17825P (20% identity) | S2.Hpa1ORF21145P | |
| ??? | S | S.Ppa46540ORF17825P (12% identity) | S1.Hpa1ORF21145P | |
| 21140 | IS3 family transposase | |||
| 21145 | M | M.Ppa46540ORF17825P (84% identity) | M.Hpa1ORF21145P | |
| 21150 | 86 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3995 | ATP-binding protein | |||
| 4000 | M | M.Hpa25ORF12200P (51% identity) | M.Hpa1ORF4000AP | |
| 4005 | M | M.PspPc102ORF20040P (12% identity) | M.Hpa1ORF4000BP | |
| 4010 | V | V.Hpa25ORF12200P (100% identity) | V.Hpa1ORF4000P | |
| 4015 | 302 aa hypothetical protein | |||
| 16530 | 64 aa hypothetical protein | |||
| 16535 | M | M.Hpa25ORF24675P (92% identity) | M.Hpa1ORF16535P | |
| 16540 | 76 aa hypothetical protein | |||
| 19995 | 143 aa hypothetical protein | |||
| 20000 | RM | PmaYSy11ORF3918P (41% identity) | Hpa1ORF20000AP | |
| 20005 | RM | Hpa25ORF2320P (23% identity) | Hpa1ORF20000BP | |
| 20010 | RM | Hpa25ORF2320P (10% identity) | Hpa1ORF20000CP | |
| 20015 | RM | Hpa25ORF2320P (14% identity) | Hpa1ORF20000DP | |
| 20020 | 88 aa hypothetical protein | |||
| 24260 | 74 aa hypothetical protein | |||
| ??? | M | M.HaeGOM5ORF18585P (74% identity) | M.Hpa1ORF24265P | |
| 24275 | 48 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16990 | Fic family protein | |||
| ??? | M | M.MspALW1ORFAP (55% identity) | M.Hpa1ORF16995P | |
| 17015 | R | MspALW1ORFAP (79% identity) | Hpa1ORF16995P | |
| 17020 | IS66 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5040 | lysophospholipid acyltransferase family protein | |||
| ??? | R | Psa14963MrrP (92% identity) | Hpa1MrrP | |
| 5055 | HipA domain-containing protein | |||
| 21115 | type I restriction endonuclease subunit R | |||
| 21120 | R | Ppa46540McrCP (100% identity) | Hpa1McrCP | |
| 21125 | R | Ppa46540McrBP (69% identity) | Hpa1McrBP | |
| 21130 | 159 aa hypothetical protein | |||