Salmonella enterica subsp. enterica serovar Newport VA_R100804798 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Newport VA_R100804798 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 38014
Complete sequence: 4,881,897 bp
GenBank #: CP140750
REBASE acronym: Sen98
Org_num: 75711
All begin SM156_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20770 | 3-5 exonuclease | |||
| 20775 | S | S.Sens29927ORF20150P (100% identity) | S1.Sen98ORF20780P | |
| 20780 | M | M2.SenXORF20095P (100% identity) | M2.Sen98ORF20780P | |
| 20785 | 44 aa hypothetical protein | |||
| 20790 | restriction endonuclease | |||
| 20795 | M | M.Sens29927ORF20165P (100% identity) | M1.Sen98ORF20780P | |
| 20800 | S | S.Sens29927ORF20165P (100% identity) | CCGANNNNNGTC | S2.Sen98ORF20780P |
| 20805 | R | Sens29927ORF20165P (100% identity) | Sen98ORF20780P | |
| 20810 | DUF5655 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen98ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 9400 | PerC family transcriptional regulator | |||
| 9405 | M | M.StyUK1V (100% identity) | GATC | M.Sen98ORF9405P |
| 9410 | RusA family crossover junction | |||
| 9640 | phosphohydrolase | |||
| 9645 | M | M.Sens29927DcmP (100% identity) | CCWGG | M.Sen98DcmP |
| 9650 | V | V.StyTDcmP (100% identity) | CCWGG | V.Sen98DcmP |
| 9655 | drug/metabolite exporter YedA | |||
| 20920 | YebC/PmpR family DNA-binding transcriptional | |||
| 20925 | R | SenXORF20240P (100% identity) | Sen98ORF20925P | |
| 20930 | 191 aa hypothetical protein | |||
| 20935 | 97 aa hypothetical protein | |||
| 20940 | M | M.SenXORF20255P (100% identity) | RCCGGY | M.Sen98ORF20940P |
| 20945 | R | SenXORF20255P (100% identity) | RCCGGY | Sen98ORF20940P |
| 20950 | DUF3696 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18530 | small effector SsaA | |||
| 18535 | R | Sens29927ORF17960P (100% identity) | CAGAG | Sen98ORF18540P |
| 18540 | M | M.Sens29927ORF17960P (100% identity) | CAGAG | M.Sen98ORF18540P |
| 18545 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20785 | 44 aa hypothetical protein | |||
| 20790 | R | Sens29927MrrP (100% identity) | Sen98MrrP | |
| 20795 | class I SAM-dependent DNA methyltransferase | |||