Escherichia coli LA3 |
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Putative Escherichia coli LA3 RM systems
Ref: Yang,J. et al. unpublished
REBASE ref # 38057
| Sequence length: | GenBank #: | |
| Chromosome: | 4,750,399 bp | CP141840 |
| plasmid pNDM-5: | 250,595 bp | CP141841 |
REBASE acronym: EcoLA3
Org_num: 73851
All begin VB103_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3455 | transposase domain-containing protein | |||
| 3460 | M | M.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | M.EcoLA3ORF3460P |
| 3465 | AAA family ATPase | |||
| 3470 | S | S2.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | S.EcoLA3ORF3460P |
| 3475 | R | SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | EcoLA3ORF3460P |
| 3480 | IS3 family transposase | |||
| 14040 | GTPase family protein | |||
| 14045 | M | M.EcosEC21ORF13545P (100% identity) | M.EcoLA3ORF14045P | |
| 14050 | IS1-like element IS1B family transposase | |||
| 14055 | glycosyltransferase | |||
| 14060 | polysaccharide pyruvyl transferase family | |||
| 14065 | IS256 family transposase | |||
| 14070 | IS5-like element ISKpn26 family transposase | |||
| ??? | S | S.EcoVA2ORFHP (100% identity) | S.EcoLA3ORF14045P | |
| 14080 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1800 | cell division protein DamX | |||
| 1805 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLA3DamP |
| 1810 | ribulose-phosphate 3-epimerase | |||
| 2355 | DUF2556 family protein | |||
| 2360 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoLA3ORF2360P |
| 2365 | DNA-binding transcriptional regulator Fis | |||
| 5730 | TraR/DksA family transcriptional regulator | |||
| 5735 | M | M.EcoVCSW8ORF5460P (100% identity) | GATC | M.EcoLA3ORF5735P |
| 5740 | replication endonuclease | |||
| 9250 | phosphohydrolase | |||
| 9255 | M | M.EcosEC71DcmP (100% identity) | CCWGG | M.EcoLA3DcmP |
| 9260 | V | V.EcosEC71DcmP (100% identity) | V.EcoLA3DcmP | |
| 9265 | drug/metabolite exporter YedA | |||
| 12315 | IS5-like element IS903B family transposase | |||
| 12320 | R | EcosEC21ORF11865P (100% identity) | GTCGAC | EcoLA3ORF12325P |
| 12325 | M | M.EcosEC21ORF11865P (99% identity) | M.EcoLA3ORF12325P | |
| 12330 | DUF977 family protein | |||
| plasmid pNDM-5 | ||||
| 23160 | 55 aa hypothetical protein | |||
| 23165 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoLA3ORF23165P |
| 23170 | thermonuclease family protein | |||
| 23575 | 48 aa hypothetical protein | |||
| 23580 | M | M.YpsF1ORFBP (100% identity) | M.EcoLA3ORF23580P | |
| 23585 | 202 aa hypothetical protein | |||
| 23715 | DNA-binding protein | |||
| 23720 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoLA3ORF23720P |
| 23725 | 284 aa hypothetical protein | |||