Helicobacter pylori 52N |
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Putative Helicobacter pylori 52N RM systems
Ref: Choi,J.G. et al. unpublished
REBASE ref # 37994
Complete sequence: 1,568,733 bp
GenBank #: CP140484
REBASE acronym: Hpy52N
Org_num: 73600
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.Hpy52ORF444P (92% identity) | S.Hpy52NORFSP | |
| ??? | M | M.Hpy52ORF444P (100% identity) | M.Hpy52NORFSP | |
| ??? | R | Hpy52ORF444P (100% identity) | Hpy52NORFSP | |
| ??? | M | M.Hpy52ORF497P (100% identity) | ACANNNNNNNTAG | M.Hpy52NORFTP |
| ??? | S | S.Hpy52ORF497P (100% identity) | ACANNNNNNNTAG | S.Hpy52NORFTP |
| ??? | R | Hpy52ORF497P (100% identity) | ACANNNNNNNTAG | Hpy52NORFTP |
| ??? | S | S.Hpy52ORF560P (99% identity) | ACANNNNNNRTAY | S.Hpy52NORFCP |
| ??? | S | S.Hpy52ORF1437P (100% identity) | CRTANNNNNNNTC | S.Hpy52NORFUP |
| ??? | M | M.Hpy52ORF1437P (100% identity) | CRTANNNNNNNTC | M.Hpy52NORFUP |
| ??? | R | Hpy52ORF1437P (100% identity) | CRTANNNNNNNTC | Hpy52NORFUP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | Hpy52ORF48P (95% identity) | Hpy52NORFRP | |
| ??? | M | M.Hpy52ORF49P (100% identity) | GANTC | M.Hpy52NORFGP |
| ??? | R | Hpy52ORF49P (100% identity) | GANTC | Hpy52NORFGP |
| ??? | R | Hpy52ORF105P (100% identity) | GATC | Hpy52NORFOP |
| ??? | M | M.Hpy52ORF105P (100% identity) | GATC | M.Hpy52NORFOP |
| ??? | R | Hpy52ORF187P (100% identity) | Hpy52NORFBP | |
| ??? | M | M.Hpy52ORF270P (100% identity) | TCGA | M.Hpy52NORFEP |
| ??? | R | HpyGE20ORF1295P (90% identity) | CCGG | Hpy52NORFPP |
| ??? | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpy52NORFPP |
| ??? | M | M.HpyK119ORF1820P (100% identity) | GCNGC | M.Hpy52NORFLP |
| ??? | M | M.Hpy52ORF459P (100% identity) | ATTAAT | M.Hpy52NORFYP |
| ??? | M | M.Hpy52ORF462P (100% identity) | ACNGT | M.Hpy52NORFMP |
| ??? | R | Hpy52ORF462P (100% identity) | ACNGT | Hpy52NORFMP |
| ??? | M | M.Hpy52ORF465P (98% identity) | ACGT | M.Hpy52NORFHP |
| ??? | R | Hpy52ORF465P (100% identity) | ACGT | Hpy52NORFHP |
| ??? | R | Hpy52ORF660P (100% identity) | CCNNGG | Hpy52NORFDP |
| ??? | M | M.Hpy52ORF660P (100% identity) | CCNNGG | M.Hpy52NORFDP |
| ??? | R | Hpy52ORF878P (100% identity) | GTNNAC | Hpy52NORFFP |
| ??? | M | M.Hpy52ORF878P (98% identity) | GTNNAC | M.Hpy52NORFFP |
| ??? | M | M.Hpy52ORF1014P (63% identity) | TCNNGA | M.Hpy52NORFJP |
| ??? | R | M.Hpy52ORF1014P (36% identity) | TCNNGA | Hpy52NORFJP |
| ??? | M | M.Hpy52ORF1051P (98% identity) | GCGC | M.Hpy52NORFKP |
| ??? | M | M.Hpy52ORF1144P (58% identity) | CATG | M.Hpy52NORFIP |
| ??? | R | M.Hpy52ORF1144P (40% identity) | CATG | Hpy52NORFIP |
| ??? | S | S.Hpy52ORF1374P (54% identity) | S2.Hpy52NORFZP | |
| ??? | S | S1.HpyK005ORF7145P (85% identity) | S1.Hpy52NORFZP | |
| ??? | M | M.Hpyfe114ORF270P (99% identity) | M.Hpy52NORFZP | |
| ??? | R | Hpyfe110ORF290P (100% identity) | GGNCC | Hpy52NORFZP |
| ??? | RM | Hpy52ORF1418P (100% identity) | Hpy52NORFQP | |
| ??? | M | M.HpySG07XI (100% identity) | TGCA | M.Hpy52NORFNP |
| ??? | R | Hpy52ORF1456P (100% identity) | TGCA | Hpy52NORFNP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Hpy52ORF529P (97% identity) | CTGA | M.Hpy52NORFVP |
| ??? | R | Hpy52ORF529P (100% identity) | CTGA | Hpy52NORFVP |
| ??? | M | M.Hpy52ORF1299P (99% identity) | M.Hpy52NORFXP | |
| ??? | R | Hpy52ORF1299P (100% identity) | Hpy52NORFXP | |
| ??? | R | Hpy52ORF1422P (100% identity) | Hpy52NORFWP | |
| ??? | M | M.Hpy52ORF1422P (100% identity) | M.Hpy52NORFWP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyK052GmrSD2P (98% identity) | Hpy52NGmrSD2P | |
| ??? | R | HpyL019GmrSDP (86% identity) | Hpy52NGmrSDP | |