Helicobacter pylori F57 |
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Putative Helicobacter pylori F57 RM systems
Ref: Furuta,Y. et al. Proc. Natl. Acad. Sci. U.S.A., DOI, DOI:10.1073/pnas.1012579108 (2011)
REBASE ref # 12381
Complete sequence: 1,609,006 bp
GenBank #: AP011945
REBASE acronym: Hpy57
Org_num: 6603
All begin HPF57_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 809 | outer membrane protein HofF | |||
| 810 | S | S.HpyPF57VIII (100% identity) | CCANNNNNNNNTTC | S.Hpy57XIII |
| 811 | cadmium-transporting ATPase | |||
| 1446 | 59 aa hypothetical protein | |||
| 1447 | S | S.HpyPF57ORF7325P (97% identity) | S.Hpy57ORF1448P | |
| 1448 | M | M.HpyPF57ORF7325P (100% identity) | M.Hpy57ORF1448P | |
| 1449 | R | HpyPF57ORF7325P (100% identity) | Hpy57ORF1448P | |
| 1450 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 46 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyPF57ORF265P (95% identity) | Hpy57ORF47P | |
| 49 | adenine specific DNA methyltransferase | |||
| ??? | adenine specific DNA methyltransferase | |||
| 49 | M | M.HpyPF57X (100% identity) | GANTC | M.Hpy57IV |
| 50 | R | HpyPF57XP (92% identity) | GANTC | Hpy57IVP |
| 51 | adenine specific DNA methyltransferase | |||
| 50 | Type II restriction enzyme | |||
| 51 | RM | adenine specific DNA methyltransferase | Hpy57ORF51P | |
| 52 | carboxyl-terminal protease | |||
| 59 | 242 aa hypothetical protein | |||
| 60 | M | M1.HpyPF57V (100% identity) | CCTC | M1.Hpy57VI |
| 61 | M | M2.HpyPF57VP (100% identity) | CCTC | M2.Hpy57VIP |
| 62 | proline permease | |||
| 141 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyPF57ORF690P (100% identity) | GATC | M.Hpy57ORF142P |
| 144 | HrgA protein | |||
| 314 | 49 aa hypothetical protein | |||
| 315 | R | HpyPF57IVP (97% identity) | CCGG | Hpy57VP |
| 316 | M | M.HpyPF57IV (100% identity) | CCGG | M.Hpy57V |
| 317 | ATP-dependent protease binding subunit | |||
| 364 | 293 aa hypothetical protein | |||
| 365 | R | HpyPF57VIP (100% identity) | CTNAG | Hpy57VIIIP |
| 366 | M | M.HpyPF57VI (100% identity) | CTNAG | M.Hpy57VIII |
| 367 | 125 aa hypothetical protein | |||
| 405 | GTP-binding protein LepA | |||
| 406 | M | M.HpyPF57XV (100% identity) | GCNGC | M.Hpy57ORF406P |
| 407 | 156 aa hypothetical protein | |||
| 506 | outer membrane protein HopK | |||
| 507 | M | M.HpyPF57II (100% identity) | ATTAAT | M.Hpy57VII |
| 508 | Type II adenine specific methyltransferase | |||
| 509 | 599 aa hypothetical protein | |||
| ??? | M | M.HpyPF57ORF2525P (100% identity) | ACNGT | M.Hpy57ORF510P |
| 512 | R | HpyPF57ORF2525P (100% identity) | ACNGT | Hpy57ORF510P |
| 513 | Type II DNA modification enzyme | |||
| 512 | Type II restriction endonuclease | |||
| 513 | M | M.HpyPF57ORF2535P (100% identity) | ACGT | M.Hpy57ORF513P |
| ??? | R | HpyPF57ORF2535P (100% identity) | ACGT | Hpy57ORF513P |
| 516 | catalase-like protein | |||
| 533 | DNA gyrase subunit B | |||
| 534 | M | M.HpyP82ORFCP (99% identity) | GTAC | M.Hpy57XI |
| 535 | R | HpyP82ORFCP (95% identity) | GTAC | Hpy57XIP |
| 536 | outer membrane protein | |||
| 689 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| ??? | RM | HpyPF57ORF3445P (100% identity) | Hpy57ORF690P | |
| 693 | outer membrane protein HorF | |||
| 710 | 270 aa hypothetical protein | |||
| 711 | M | M.HpyTN2ORF7450P (100% identity) | GGNNCC | M.Hpy57ORF711P |
| ??? | R | HpyPF57XVI (100% identity) | GGNNCC | Hpy57ORF711P |
| 714 | 133 aa hypothetical protein | |||
| 918 | flagellar hook protein FlgE | |||
| 919 | R | HpyPF57ORF4595P (100% identity) | GTNNAC | Hpy57IXP |
| 920 | M | M.HpyPF57ORF4595P (100% identity) | GTNNAC | M.Hpy57IX |
| 921 | rep helicase, single-stranded DNA-dependent | |||
| 1047 | biotin carboxylase | |||
| 1048 | M | M.HpyPF57XII (100% identity) | TCNNGA | M.Hpy57III |
| 1049 | R | HpyPF57XIIP (100% identity) | TCNNGA | Hpy57IIIP |
| 1050 | 214 aa hypothetical protein | |||
| 1083 | 144 aa hypothetical protein | |||
| 1084 | M | M.Hpyfe107ORF6245P (99% identity) | GCGC | M.Hpy57ORF1084P |
| 1085 | flgM protein | |||
| 1129 | outer membrane protein HofH | |||
| 1130 | M | M.HpyPF57VII (100% identity) | CTRYAG | M.Hpy57X |
| 1131 | R | HpyPF57VIIP (100% identity) | CTRYAG | Hpy57XP |
| 1132 | carbon starvation protein | |||
| 1169 | 222 aa hypothetical protein | |||
| 1170 | M | M.HpyPF57I (100% identity) | CATG | M.Hpy57I |
| ??? | R | HpyJA113IP (100% identity) | CATG | Hpy57IP |
| 1172 | serine acetyltransferase | |||
| 1385 | DNA polymerase I | |||
| 1386 | S | S.HpyPF57ORF7025P (100% identity) | S.Hpy57ORF1387P | |
| 1387 | RM | HpyPF57ORF7025P (100% identity) | Hpy57ORF1387P | |
| 1388 | 191 aa hypothetical protein | |||
| 1429 | transcription elongation factor NusA | |||
| ??? | RM | HpyPF57ORF7235P (100% identity) | Hpy57ORF1430P | |
| 1432 | 717 aa hypothetical protein | |||
| 1466 | 67 aa hypothetical protein | |||
| 1467 | M | M.HpyPF57XIII (100% identity) | TGCA | M.Hpy57II |
| 1468 | R | HpyPF57XIIIP (100% identity) | TGCA | Hpy57IIP |
| 1469 | 142 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein | |||
| 33 | R | HpyPF57ORF205P (100% identity) | Hpy57ORF34P | |
| 34 | M | M.HpyPF57ORF205P (100% identity) | M.Hpy57ORF34P | |
| 35 | transcriptional regulator | |||
| 277 | exodeoxyribonuclease VII large subunit | |||
| 278 | M | Type II DNA modification enzyme | M.Hpy57ORF278P | |
| 279 | 254 aa hypothetical protein | |||
| 311 | integrase/recombinase | |||
| 312 | M | M.HpyBR13ORF1415P (98% identity) | M.Hpy57ORF312P | |
| 313 | 155 aa hypothetical protein | |||
| 1319 | endonuclease, split and separated by | |||
| 1320 | M | M.HpyPF57ORF6660P (100% identity) | M.Hpy57ORF1320P | |
| 1321 | R | HpyPF57ORF6660P (92% identity) | Hpy57ORF1320P | |
| 1322 | biotin synthase | |||
| 1432 | 717 aa hypothetical protein | |||
| 1433 | R | HpyPF57ORF7250P (100% identity) | Hpy57ORF1434P | |
| ??? | M | M.HpyJA113ORF7250P (100% identity) | M.Hpy57ORF1434P | |
| 1436 | DNA recombinase | |||