Helicobacter pylori F32 |
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Putative Helicobacter pylori F32 RM systems
Ref: Furuta,Y. et al. Proc. Natl. Acad. Sci. U.S.A., DOI, DOI:10.1073/pnas.1012579108 (2011)
REBASE ref # 12381
Complete sequence: 1,578,824 bp
GenBank #: AP011943
REBASE acronym: Hpy32
Org_num: 6602
All begin HPF32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 756 | outer membrane protein HofF | |||
| 757 | S | S.HpyJA112II (100% identity) | ACANNNNNNRTAY | S.Hpy32XVI |
| 758 | cadmium-transporting ATPase | |||
| 812 | thiamine phosphate pyrophosphorylase | |||
| 813 | R | HpyJA112XVIIP (100% identity) | GAYNNNNNRTAY | Hpy32XIVP |
| 814 | S | S.HpyJA112XVII (100% identity) | GAYNNNNNRTAY | S.Hpy32XIV |
| 815 | M | M.HpyJA112XVII (100% identity) | GAYNNNNNRTAY | M.Hpy32XIV |
| 816 | Type II modification enzyme | |||
| 867 | 631 aa hypothetical protein | |||
| ??? | R | HpyJA112ORF4390P (100% identity) | Hpy32ORF870P | |
| 870 | M | M.HpyJA112ORF4390P (100% identity) | M.Hpy32ORF870P | |
| 871 | S | S.HpyJA112ORF4390P (100% identity) | S.Hpy32ORF870P | |
| 872 | polyphosphate kinase | |||
| 1418 | FAD-dependent thymidylate synthase | |||
| 1419 | S | S.HpyJA112VII (100% identity) | CRTANNNNNNNTC | S.Hpy32XV |
| 1420 | M | M.HpyJA112VII (100% identity) | CRTANNNNNNNTC | M.Hpy32XV |
| 1421 | R | HpyJA112VIIP (100% identity) | CRTANNNNNNNTC | Hpy32XVP |
| 1422 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | Type III restriction enzyme R protein | |||
| 33 | M | M2.HpyU204VIII (100% identity) | GAAGA | M1.Hpy32II |
| 34 | M | M2.HpyJA112VIII (100% identity) | GAAGA | M2.Hpy32II |
| 35 | R | HpyJA112VIIIP (100% identity) | GAAGA | Hpy32IIP |
| 36 | transcriptional regulator | |||
| 47 | nicotinate-nucleotide pyrophosphorylase | |||
| 48 | RM | HpyJA112ORF270P (100% identity) | Hpy32ORF48P | |
| 49 | adenine specific DNA methyltransferase | |||
| 48 | Type IIG restriction-modification enzyme | |||
| 49 | M | M.HpyJA112IX (100% identity) | GANTC | M.Hpy32IV |
| 50 | R | HpyJA112IXP (77% identity) | GANTC | Hpy32IVP |
| 51 | carboxyl-terminal protease | |||
| 58 | 242 aa hypothetical protein | |||
| 59 | M | M1.HpyJA112VI (100% identity) | CCTC | M1.Hpy32VI |
| 60 | M | M2.HpyJA112VIP (94% identity) | CCTC | M2.Hpy32VIP |
| 61 | proline permease | |||
| 101 | malonyl coenzyme A-acyl carrier protein | |||
| ??? | R | HpyJA112XP (100% identity) | GATC | Hpy32IIIP |
| 104 | M | M.HpyJA112X (100% identity) | GATC | M.Hpy32III |
| 105 | alpha-1,2-fucosyltransferase | |||
| 186 | Type IV restriction-modification enzyme | |||
| 187 | R | R2.HpyJA112ORF925P (100% identity) | Hpy32ORF187P | |
| 188 | sialic acid synthase | |||
| 268 | exodeoxyribonuclease VII large subunit | |||
| 269 | M | M.HpyJA112XIII (100% identity) | TCGA | M.Hpy32X |
| 270 | 204 aa hypothetical protein | |||
| 270 | 204 aa hypothetical protein | |||
| 271 | R | HpyJA112VP (100% identity) | CCGG | Hpy32XIP |
| 272 | M | M.Hpyfe102ORF5915P (100% identity) | CCGG | M.Hpy32XI |
| 273 | ATP-dependent protease binding subunit | |||
| 443 | rep helicase, single-stranded DNA-dependent | |||
| 444 | M | M.HpyJA112XII (100% identity) | GTNNAC | M.Hpy32IX |
| 445 | R | HpyJA112XIIP (100% identity) | GTNNAC | Hpy32IXP |
| 446 | flagellar hook protein FlgE | |||
| 483 | DNA gyrase subunit B | |||
| 484 | M | M.HpyUM023ORF5920P (99% identity) | GTAC | M.Hpy32XII |
| 485 | R | HpyJA112XIP (100% identity) | GTAC | Hpy32XIIP |
| 486 | outer membrane protein | |||
| 650 | Type IIG restriction-modification enzyme | |||
| 651 | RM | HpyJA112ORF3300P (98% identity) | Hpy32ORF651P | |
| 652 | Type IIG restriction-modification enzyme | |||
| 651 | Type IIG restriction-modification enzyme | |||
| 652 | RM | HpyK050ORF3505P (19% identity) | Hpy32ORF652P | |
| 653 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 815 | Type I restriction enzyme M protein | |||
| 816 | M | M.HpyK033ORF2720P (100% identity) | GGCC | M.Hpy32ORF816P |
| 817 | R | HpyK033ORF2720P (100% identity) | GGCC | Hpy32ORF816P |
| 818 | 228 aa hypothetical protein | |||
| 848 | catalase-like protein | |||
| 849 | R | HpyJA112ORF4295P (100% identity) | ACGT | Hpy32ORF850P |
| 850 | M | M.HpyJA112ORF4295P (100% identity) | ACGT | M.Hpy32ORF850P |
| 851 | 599 aa hypothetical protein | |||
| 852 | Type II adenine specific methyltransferase | |||
| 853 | M | M.HpyJA112III (100% identity) | ATTAAT | M.Hpy32VII |
| 854 | outer membrane protein HopK | |||
| 952 | 156 aa hypothetical protein | |||
| 953 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpy32ORF953P |
| 954 | GTP-binding protein LepA | |||
| 1022 | biotin carboxylase | |||
| 1023 | M | M.Hpyfe64ORF6075P (100% identity) | TCNNGA | M.Hpy32VIII |
| 1024 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpy32VIIIP |
| 1025 | 212 aa hypothetical protein | |||
| 1056 | 144 aa hypothetical protein | |||
| 1057 | M | M.HpyJA112XVI (98% identity) | GCGC | M.Hpy32XVII |
| 1058 | flgM protein | |||
| 1139 | 222 aa hypothetical protein | |||
| 1140 | M | M.HpyJA112I (100% identity) | CATG | M.Hpy32I |
| 1141 | R | HpyJA112IP (100% identity) | CATG | Hpy32IP |
| 1142 | serine acetyltransferase | |||
| 1357 | DNA polymerase I | |||
| 1358 | S | S.Hpyfe54ORF285P (97% identity) | S.Hpy32ORF1359P | |
| 1359 | RM | HpyJA112ORF6940P (100% identity) | Hpy32ORF1359P | |
| 1360 | 191 aa hypothetical protein | |||
| 1385 | 355 aa hypothetical protein | |||
| 1386 | M | M1.HpyJA112IV (100% identity) | CCATC | M1.Hpy32XIII |
| 1387 | M | M2.HpyJA112IV (93% identity) | CCATC | M2.Hpy32XIII |
| ??? | R | HpyJA112IVP (100% identity) | CCATC | Hpy32XIIIP |
| 1390 | outer membrane protein | |||
| 1403 | transcription elongation factor NusA | |||
| 1404 | RM | HpyJA112ORF7160P (100% identity) | Hpy32ORF1404P | |
| 1405 | Type III restriction enzyme | |||
| 1439 | 67 aa hypothetical protein | |||
| 1440 | M | M.HpyJA112XV (100% identity) | TGCA | M.Hpy32V |
| 1441 | R | HpyJA112XVP (100% identity) | TGCA | Hpy32VP |
| 1442 | 107 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 31 | rod shape-determining protein | |||
| 32 | R | Type III restriction enzyme R protein | Hpy32ORF32P | |
| 33 | Type IIS restriction enzyme M2 protein | |||
| 1290 | endonuclease, split and separated by | |||
| 1291 | M | M.HpyJA112ORF6580P (100% identity) | M.Hpy32ORF1291P | |
| 1292 | R | HpyJA112ORF6580P (93% identity) | Hpy32ORF1291P | |
| 1293 | biotin synthase | |||
| 1404 | Type IIG restriction-modification enzyme | |||
| ??? | R | HpyJA112ORF7170P (99% identity) | Hpy32ORF1407P | |
| ??? | M | M.HpyJA112ORF7170P (100% identity) | M.Hpy32ORF1407P | |
| 1409 | DNA recombinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 185 | elongation factor P | |||
| 186 | R | R1.HpyJA112ORF925P (91% identity) | Hpy32McrBP | |
| 187 | Type II restriction enzyme | |||