Helicobacter pylori F30 |
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Putative Helicobacter pylori F30 RM systems
Ref: Furuta,Y. et al. Proc. Natl. Acad. Sci. U.S.A., DOI, DOI:10.1073/pnas.1012579108 (2011)
REBASE ref # 12381
Complete sequence: 1,570,564 bp
GenBank #: AP011941
REBASE acronym: Hpy30
Org_num: 6601
All begin HPF30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 482 | Type II modification enzyme | |||
| 483 | M | M.HpyJA105ORF3495P (97% identity) | M.Hpy30ORF483P | |
| 484 | S | S.HpyOK95ORFOP (93% identity) | S.Hpy30ORF483P | |
| 485 | R | HpyJ012ORF4235P (96% identity) | Hpy30ORF483P | |
| 486 | thiamine phosphate pyrophosphorylase | |||
| 540 | cadmium-transporting ATPase | |||
| ??? | S | S.HpyOK310ORFTP (96% identity) | GACNNNNNTG | S.Hpy30ORF541P |
| 543 | outer membrane protein HofF | |||
| 1298 | 83 aa hypothetical protein | |||
| 1299 | S | S.Hpy015ORF7590P (91% identity) | GRNAANNNNNNNTAYG | S.Hpy30XV |
| 1300 | formyltetrahydrofolate hydrolase | |||
| 1404 | FAD-dependent thymidylate synthase | |||
| 1405 | S | S.HpySG06ORF7335P (98% identity) | S.Hpy30ORF1406P | |
| 1406 | M | M.HpyAR8VII (96% identity) | M.Hpy30ORF1406P | |
| 1407 | R | HpyGU71CORFFP (97% identity) | Hpy30ORF1406P | |
| 1408 | 56 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 46 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpyfe122ORF6845P (93% identity) | Hpy30ORF47P | |
| 50 | carboxyl-terminal protease | |||
| 183 | serine acetyltransferase | |||
| 184 | R | HpyF219ORFLP (96% identity) | CATG | Hpy30IP |
| 185 | M | M.HpyDU8AORFTP (92% identity) | CATG | M.Hpy30I |
| 186 | 222 aa hypothetical protein | |||
| 267 | flgM protein | |||
| 268 | M | M.HpyJA111XIII (99% identity) | GCGC | M.Hpy30ORF268P |
| 269 | 144 aa hypothetical protein | |||
| 300 | 214 aa hypothetical protein | |||
| 301 | R | Hpy334ORFXP (98% identity) | TCNNGA | Hpy30VIIIP |
| 302 | M | M.Hpyfe78ORF4965P (100% identity) | TCNNGA | M.Hpy30VIII |
| 303 | biotin carboxylase | |||
| 428 | rep helicase, single-stranded DNA-dependent | |||
| 429 | M | M.HpyCHN3VIII (99% identity) | GTNNAC | M.Hpy30IX |
| 430 | R | HpyMKF3ORF925P (100% identity) | GTNNAC | Hpy30IXP |
| 431 | flagellar hook protein FlgE | |||
| 480 | 228 aa hypothetical protein | |||
| 481 | R | HpyJA106ORF4245P (99% identity) | GGCC | Hpy30ORF482P |
| 482 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.Hpy30ORF482P |
| 483 | Type I restriction enzyme M protein | |||
| 660 | outer membrane protein HorF | |||
| 661 | RM | Hpy321ORFOP (92% identity) | Hpy30ORF661P | |
| 662 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 836 | catalase-like protein | |||
| 837 | R | HpyP88ORFWP (98% identity) | ACGT | Hpy30ORF838P |
| 838 | M | M.Hpyfe106ORF4905P (99% identity) | ACGT | M.Hpy30ORF838P |
| 839 | Type II restriction endonuclease | |||
| 838 | Type II DNA modification enzyme | |||
| 839 | R | HpyMKM6ORF482P (100% identity) | ACNGT | Hpy30ORF840P |
| 840 | M | Type II adenine specific DNA methyltransferase | ACNGT | M.Hpy30ORF840P |
| 841 | 599 aa hypothetical protein | |||
| 842 | Type II adenine specific methyltransferase | |||
| 843 | M | M.Hpy90ORF489P (98% identity) | ATTAAT | M.Hpy30VII |
| 844 | outer membrane protein HopK | |||
| 981 | 128 aa hypothetical protein | |||
| 982 | M | M.HpyP30ORFOP (100% identity) | CTNAG | M.Hpy30X |
| 983 | R | HpyOK68ORFMP (94% identity) | CTNAG | Hpy30XP |
| 984 | 299 aa hypothetical protein | |||
| 1032 | ATP-dependent protease binding subunit | |||
| 1033 | M | M.Hpyfe38ORF5830P (99% identity) | CCGG | M.Hpy30V |
| 1034 | R | HpyMA20IIP (60% identity) | CCGG | Hpy30VP |
| 1035 | 204 aa hypothetical protein | |||
| 1035 | 204 aa hypothetical protein | |||
| 1036 | M | M.Hpyfe72ORF5775P (98% identity) | TCGA | M.Hpy30II |
| 1037 | exodeoxyribonuclease VII large subunit | |||
| 1116 | sialic acid synthase | |||
| 1117 | R | R1.Hpyfe17ORF6170P (98% identity) | Hpy30ORF1117P | |
| 1118 | Type IV restriction-modification enzyme | |||
| 1169 | malonyl coenzyme A-acyl carrier protein | |||
| 1170 | R | HpyGU82AORFQP (97% identity) | GATC | Hpy30IIIP |
| 1171 | M | M.HpyK029VII (98% identity) | GATC | M.Hpy30III |
| 1172 | alpha-1,2-fucosyltransferase | |||
| 1246 | proline permease | |||
| 1247 | M | adenine/cytosine DNA methyltransferase | CCTTC | M.Hpy30ORF1247P |
| 1248 | type II DNA modification enzyme | |||
| 1247 | adenine/cytosine DNA methyltransferase | |||
| 1248 | R | HpyMA23XP (97% identity) | CCTC | Hpy30XIIP |
| 1249 | M | M2.HpyOK310ORFLP (99% identity) | CCTC | M2.Hpy30XIIP |
| 1250 | M | M.HpyJSHR3ORF2070P (98% identity) | CCTC | M1.Hpy30XII |
| 1251 | 330 aa hypothetical protein | |||
| 1284 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 1285 | M | M.Hpyfe77ORF545P (99% identity) | GAATTC | M.Hpy30IV |
| 1286 | R | HpyK035VIIIP (98% identity) | GAATTC | Hpy30IVP |
| 1287 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1337 | DNA polymerase I | |||
| 1338 | S | S.HpyOK34ORFEBP (98% identity) | S1.Hpy30ORF1340P | |
| 1339 | Type II restriction-modification specificity | |||
| 1340 | RM | HpyJP26XV (98% identity) | Hpy30ORF1340P | |
| 1341 | 191 aa hypothetical protein | |||
| 1366 | 355 aa hypothetical protein | |||
| 1367 | M | M1.HpyT027III (99% identity) | CCATC | M1.Hpy30XI |
| ??? | M | M2.HpyJ015VI (92% identity) | CCATC | M2.Hpy30XIP |
| 1370 | R | HpyGU71CORFDP (97% identity) | CCATC | Hpy30XI |
| 1371 | outer membrane protein | |||
| 1389 | 306 aa hypothetical protein | |||
| 1390 | RM | Hpy17ORF1417P (94% identity) | AGGAG | Hpy30XIII |
| 1391 | 712 aa hypothetical protein | |||
| 1423 | 67 aa hypothetical protein | |||
| 1424 | M | M.HpyJSHR31ORF14920P (100% identity) | TGCA | M.Hpy30VI |
| 1425 | R | Hpy1838CXIP (99% identity) | TGCA | Hpy30VIP |
| 1426 | Type II DNA modification enzyme | |||
| 1425 | Type II restriction enzyme | |||
| 1426 | M | M.Hpy78ORF1530P (99% identity) | M.Hpy30ORF1426P | |
| 1427 | 366 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | rod shape-determining protein | |||
| 33 | R | HpyP96ORFFP (95% identity) | GGCAA | Hpy30XVIP |
| 34 | M | M.HpyF235ORFEP (98% identity) | GGCAA | M.Hpy30XVI |
| 35 | transcriptional regulator | |||
| 1272 | endonuclease, split and separated by | |||
| 1273 | M | M.Hpy23ORF1296P (98% identity) | M.Hpy30ORF1273P | |
| 1274 | R | HpyUM065ORF3390P (96% identity) | Hpy30ORF1273P | |
| 1275 | biotin synthase | |||
| 1391 | 712 aa hypothetical protein | |||
| 1392 | R | Hpy1838CORF16030P (97% identity) | Hpy30ORF1393P | |
| ??? | M | M.HpyU410ORF7300P (94% identity) | M.Hpy30ORF1393P | |
| 1395 | DNA recombinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1117 | Type II restriction enzyme | |||
| 1118 | R | R1.Hpyfe64ORF1930P (99% identity) | Hpy30McrBP | |
| 1119 | elongation factor P | |||