Escherichia coli PSS-13 |
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Putative Escherichia coli PSS-13 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,649,078 bp | AP027704 |
| plasmid pPSS-13_1: | 166,021 bp | AP027705 |
| plasmid pPSS-13_2: | 85,379 bp | AP027706 |
REBASE acronym: EcoPSS13
Org_num: 72665
All begin VEE20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pPSS-13_1 | ||||
| 44660 | 168 aa hypothetical protein | |||
| 44670 | R | EcoLR622ORF46190P (100% identity) | EcoPSS13ORF44690P | |
| 44680 | S | S.EcoRL21ORF23455P (99% identity) | S.EcoPSS13ORF44690P | |
| 44690 | M | M.EcoRL21ORF23455P (99% identity) | M.EcoPSS13ORF44690P | |
| 44700 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3500 | cell division protein DamX | |||
| 3510 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPSS13DamP |
| 3520 | ribulose-phosphate 3-epimerase | |||
| 4700 | acrEF/envCD operon repressor | |||
| 4710 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoPSS13ORF4710P |
| 4720 | DNA-binding protein Fis | |||
| 7370 | ATP-dependent helicase | |||
| 7380 | RM | Eco4GORF3785P (99% identity) | EcoPSS13ORF7380P | |
| 11720 | 64 aa hypothetical protein | |||
| 11730 | M | M.Sdy9753ORFBP (99% identity) | M.EcoPSS13ORF11730P | |
| 11740 | transcriptional activator | |||
| 16080 | 252 aa hypothetical protein | |||
| 16090 | R | EcoYSP81ORFBP (100% identity) | RCSRC | EcoPSS13ORF16090P |
| 16100 | 81 aa hypothetical protein | |||
| 17470 | phosphohydrolase | |||
| 17480 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoPSS13DcmP |
| 17490 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoPSS13DcmP |
| 17500 | multidrug transporter | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pPSS-13_2 | ||||
| 45950 | IS30 family transposase | |||
| 45960 | R | SspS13ORF650P (100% identity) | EcoPSS13ORF45970P | |
| 45970 | M | M.SspS13ORF650P (100% identity) | M.EcoPSS13ORF45970P | |
| 45980 | 67 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15950 | 86 aa hypothetical protein | |||
| ??? | R | EcoC721ORFAP (100% identity) | EcoPSS13ORFAP | |
| 15960 | 108 aa hypothetical protein | |||
| 37790 | endoribonuclease SymE | |||
| 37800 | R | EcoR6GmrSDP (100% identity) | EcoPSS13GmrSDP | |
| 37810 | 49 aa hypothetical protein | |||