Escherichia coli LR-71-1 |
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Putative Escherichia coli LR-71-1 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,685,753 bp | AP027599 |
| plasmid pLR-71-1_1: | 134,893 bp | AP027600 |
| plasmid pLR-71-1_2: | 108,617 bp | AP027601 |
| plasmid pLR-71-1_3: | 107,143 bp | AP027602 |
| plasmid pLR-71-1_4: | 81,917 bp | AP027603 |
REBASE acronym: EcoLR711
Org_num: 72643
All begin VEE28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9890 | metal-dependent hydrolase | |||
| 9900 | R | Eho0642ORF9005P (98% identity) | EcoLR711ORF9900P | |
| 9910 | 594 aa hypothetical protein | |||
| 34060 | endoribonuclease SymE | |||
| 34070 | S | S.EcoA19ORF2660P (100% identity) | S.EcoLR711ORF34080P | |
| 34080 | M | M.SflTORF4636P (98% identity) | M.EcoLR711ORF34080P | |
| 34090 | R | EcoTR01ORF28315P (100% identity) | EcoLR711ORF34080P | |
| 34100 | 557 aa hypothetical protein | |||
| plasmid pLR-71-1_3 | ||||
| 47910 | 73 aa hypothetical protein | |||
| 47920 | M | M.EcoPSS10ORF26960P (100% identity) | M.EcoLR711ORF47920P | |
| 47930 | S | S1.EcoS082ORF15350P (98% identity) | S.EcoLR711ORF47920P | |
| 47940 | R | EcoPK8277ORF23015P (99% identity) | EcoLR711ORF47920P | |
| 47950 | 168 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10530 | inner membrane transporter YedA | |||
| 10540 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoLR711DcmP |
| 10550 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoLR711DcmP |
| 10560 | 142 aa hypothetical protein | |||
| 23940 | DNA-binding protein Fis | |||
| 23950 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoLR711ORF23950P |
| 23960 | acrEF/envCD operon repressor | |||
| 25020 | ribulose-phosphate 3-epimerase | |||
| 25030 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR711DamP |
| 25040 | cell division protein DamX | |||
| 33630 | 947 aa hypothetical protein | |||
| ??? | M | M.EcoPSS04ORF37360P (47% identity) | M.EcoLR711ORF33650P | |
| 33660 | insertion element IS1 2 protein InsA | |||
| 33670 | insertion element IS1 protein InsB | |||
| ??? | R | EcoPSS04ORF37280P (100% identity) | EcoLR711ORF33680P | |
| 33700 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 39620 | 71 aa hypothetical protein | |||
| 39630 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoLR711ORF39630P |
| 39640 | exonuclease | |||
| 43600 | 75 aa hypothetical protein | |||
| 43610 | M | M.Ecop10BORF14750P (99% identity) | GATC | M.EcoLR711ORF43610P |
| 43620 | replication endonuclease from | |||
| plasmid pLR-71-1_1 | ||||
| 45150 | 308 aa hypothetical protein | |||
| 45160 | M | M.SenS380ORF24445P (100% identity) | M.EcoLR711ORF45160P | |
| 45170 | 73 aa hypothetical protein | |||
| plasmid pLR-71-1_2 | ||||
| 46810 | 73 aa hypothetical protein | |||
| 46820 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoLR711ORF46820P |
| 46830 | 308 aa hypothetical protein | |||
| plasmid pLR-71-1_4 | ||||
| 48480 | 88 aa hypothetical protein | |||
| 48490 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.EcoLR711ORF48490P |
| 48500 | R | Ssp3CORF24390P (100% identity) | CCWGG | EcoLR711ORF48490P |
| 48510 | IS6 family transposase | |||
| 48550 | 308 aa hypothetical protein | |||
| 48560 | M | M.Sen1357ORF24335P (100% identity) | M.EcoLR711ORF48560P | |
| 48570 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 34040 | DUF1127 domain-containing protein | |||
| 34050 | R | EcoUTI89GmrSDP (94% identity) | EcoLR711GmrSDP | |
| 34060 | endoribonuclease SymE | |||